Browse Element(s) Details


OsAffx.26797.1.S1_at

Description tigr:9633.m00840
TID=OsAffx.26797.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0935010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09310NANA5+5181077..5181376hypothetical protein
LOC_Os05g09320Os.45976.1.S1_at2/115+5182106..5185601transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09320Os.45976.1.S1_x_at2/115+5182106..5185601transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09330OsAffx.32056.1.S1_x_at11/115+5186530..5194036transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09330OsAffx.32056.1.S1_at11/115+5186530..5194036transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09330OsAffx.12420.1.S1_at1/115+5186530..5194036transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09340OsAffx.10637.3.S1_s_at11/115+5195672..5199358transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09340OsAffx.10637.1.S1_s_at11/115+5195672..5199358transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09340OsAffx.10637.4.S1_s_at8/115+5195672..5199358transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09350OsAffx.26797.1.S1_at10/115+5205268..5205982hypothetical protein
LOC_Os05g09360Os.9147.1.S1_s_at11/115+5216276..5228055glycine-rich protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26797.1.S1_at--958--6911Chr05:5205341..5205365 (25 bp)
GTAGGACAGAGAAGCCCAGGGCCAC
LOC_Os05g09350
OsAffx.26797.1.S1_at--346--5411Chr05:5205351..5205375 (25 bp)
GAAGCCCAGGGCCACATCTGCTTAT
LOC_Os05g09350
OsAffx.26797.1.S1_at--755--2091Chr05:5205364..5205388 (25 bp)
ACATCTGCTTATCCCTGCTCGTGCT
LOC_Os05g09350
OsAffx.26797.1.S1_at--931--4271Chr05:5205377..5205401 (25 bp)
CCTGCTCGTGCTACGGATGGAGGAA
LOC_Os05g09350
OsAffx.26797.1.S1_at--816--7511NONE
GTGGAGATGTTGTGCAGCCTCCTCA
NONE
OsAffx.26797.1.S1_at--928--4131Chr05:5205777..5205801 (25 bp)
CGCTCGAGCTTCATCTCCGCGTGAG
LOC_Os05g09350
OsAffx.26797.1.S1_at--296--471Chr05:5205789..5205813 (25 bp)
ATCTCCGCGTGAGCTATGCAGAGCC
LOC_Os05g09350
OsAffx.26797.1.S1_at--981--6071Chr05:5205815..5205839 (25 bp)
GAGTATGCGAGGTGGATGCTTTCCC
LOC_Os05g09350
OsAffx.26797.1.S1_at--881--1051Chr05:5205824..5205848 (25 bp)
AGGTGGATGCTTTCCCGCTCTCCAA
LOC_Os05g09350
OsAffx.26797.1.S1_at--21--311Chr05:5205911..5205935 (25 bp)
ATAGCTCTCTCCTCCAAGATGTTAG
LOC_Os05g09350
OsAffx.26797.1.S1_at--1106--2791Chr05:5205926..5205950 (25 bp)
AAGATGTTAGCCATGCCTTGCCTCG
LOC_Os05g09350
Target Sequence 
GTAGGACAGAGAAGCCCAGGGCCACATCTGCTTATCCCTGCTCGTGCTACGGATGGAGGAACTGGAACGGCGTTGGCGGT
GTCCTGGGGAGGTGGTGGTGGAGATGTTGTGCAGCCTCCTCACCGTTGCCTCCGCTCGAGCTTCATCTCCGCGTGAGCTA
TGCAGAGCCGGAGTATGCGAGGTGGATGCTTTCCCGCTCTCCAAGCTCCGTCGTCCATCGTCCACCAGGGGCAGCCACAG
CTGGCGAGCACCTCGCCTCCGCGGGCATAGCTCTCTCCTCCAAGATGTTAGCCATGCCTTGCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis