Browse Element(s) Details


OsAffx.26805.1.S1_at

Description tigr:9633.m00879
TID=OsAffx.26805.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0967011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09630Os.23760.2.S1_x_at11/115+5420780..5424285expressed protein
LOC_Os05g09630Os.23760.1.S1_at7/115+5420780..5424285expressed protein
LOC_Os05g09640OsAffx.14616.1.S1_at11/115+5426193..5427430Leucine Rich Repeat family protein, expressed
LOC_Os05g09650Os.49179.1.S1_at3/115+5429455..5431324Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os05g09660OsAffx.16862.1.S1_at2/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.29326.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.17706.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09670OsAffx.26805.1.S1_at11/115+5441685..5442425hypothetical protein
LOC_Os05g09680OsAffx.26806.1.S1_at11/115+5444670..5447995hypothetical protein
LOC_Os05g09700NANA5+5450156..5450362hypothetical protein
LOC_Os05g09704Os.10534.1.S1_at11/115+5452049..5454029HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09708NANA5+5460559..5462104hypothetical protein
LOC_Os05g09712OsAffx.22421.4.S1_x_at1/115+5465639..5467936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09712Os.26886.3.S1_x_at1/115+5465639..5467936transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26805.1.S1_at--472--3931Chr05:5441853..5441877 (25 bp)
CGGCTGACGTGGACGCGGTTCAACA
LOC_Os05g09670
OsAffx.26805.1.S1_at--333--3951Chr05:5441868..5441892 (25 bp)
CGGTTCAACACCTCCGACAGAGCGG
LOC_Os05g09670
OsAffx.26805.1.S1_at--521--5131Chr05:5442018..5442042 (25 bp)
GCAAACACAACGGAAGGGAACACAT
LOC_Os05g09670
OsAffx.26805.1.S1_at--137--7631Chr05:5442033..5442057 (25 bp)
GGGAACACATCCAAGATCGAAGGAA
LOC_Os05g09670
OsAffx.26805.1.S1_at--563--2331Chr05:5442083..5442107 (25 bp)
AAAGAGACTGAACCGAGTGATGAAC
LOC_Os05g09670
OsAffx.26805.1.S1_at--580--2131Chr05:5442137..5442161 (25 bp)
ACAACCCCAATGTGGACTAACCTCG
LOC_Os05g09670
OsAffx.26805.1.S1_at--263--7571Chr05:5442196..5442220 (25 bp)
GGGCGCCGACAAAAGCAACAGGACA
LOC_Os05g09670
OsAffx.26805.1.S1_at--732--1111Chr05:5442225..5442249 (25 bp)
AGCTCGTACGAGGAAACCACCGGCG
LOC_Os05g09670
OsAffx.26805.1.S1_at--680--5991Chr05:5442255..5442279 (25 bp)
GAGACGACCAATCCGAAGGGCACAA
LOC_Os05g09670
OsAffx.26805.1.S1_at--418--2891Chr05:5442289..5442313 (25 bp)
AAGGGTCAACGAGGGCCCCATACAG
LOC_Os05g09670
OsAffx.26805.1.S1_at--68--7613Chr06:11668912..11668935 (24 bp)
GGGAAAATCGCACCTCCATACCCAA
NONE
Target Sequence 
CGGCTGACGTGGACGCGGTTCAACACCTCCGACAGAGCGGGGACGGCGGCGTCCGTGCAGCACAACACCCACGCAGATCC
CACAGAGCTACCCCTCATCCTAATCGCAATCCCCGGCCAGGAACGGGCAAATCCCATCCCCCATCGTCGGCACCTCCTCC
GGTCAGCAAACACAACGGAAGGGAACACATCCAAGATCGAAGGAAAAAAAAGCAGTCACAACAGAGGGGAAAAGAGACTG
AACCGAGTGATGAACAAATACAGCAAGAAAGAACAAAGAACAACACAACCCCAATGTGGACTAACCTCGACCGATTCAGG
AAGGGAAGATGGGAAGCAGCAAGGGGCGCCGACAAAAGCAACAGGACAGGCGAGCTCGTACGAGGAAACCACCGGCGACG
GGGAGACGACCAATCCGAAGGGCACAAGAAAGAAGAAAGGGTCAACGAGGGCCCCATACAGAGACGGCCGGCAGGGGAAA
ATCGCACCTCCATACCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis