Browse Element(s) Details


OsAffx.2685.1.S1_at

Description tigr:9630.m01856
TID=OsAffx.2685.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AF133840 heat shock protein HSP101
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1945011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19410OsAffx.12120.1.S1_at11/112+11335644..11337705hypothetical protein
LOC_Os02g19420Os.13737.1.S1_s_at11/112+11339975..11344905Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19420OsAffx.12121.1.S1_at11/112+11339975..11344905Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19430NANA2+11352154..11352673hypothetical protein
LOC_Os02g19440Os.9791.1.S1_at11/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19440Os.9791.1.S1_x_at11/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19440OsAffx.24325.1.S1_at10/112+11353282..11357736CbiX family protein, expressed
LOC_Os02g19450OsAffx.2685.1.S1_x_at11/112+11361414..11363761ATPase, AAA family protein, expressed
LOC_Os02g19450OsAffx.2685.1.S1_at11/112+11361414..11363761ATPase, AAA family protein, expressed
LOC_Os02g19460OsAffx.24242.5.S1_x_at9/112+11368560..11370492hypothetical protein
LOC_Os02g19460OsAffx.24242.5.S1_at9/112+11368560..11370492hypothetical protein
LOC_Os02g19460OsAffx.29326.1.S1_at1/112+11368560..11370492hypothetical protein
LOC_Os02g19470Os.49682.1.S1_at11/112+11376715..11379300expressed protein
LOC_Os02g19480NANA2+11385464..11386500retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g19490OsAffx.24327.1.S1_at11/112+11387831..11390408retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0009408biological_processresponse to heat
GO:0009658biological_processchloroplast organization and biogenesis
GO:0043335biological_processprotein unfolding
GO:0045037biological_processprotein import into chloroplast stroma
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2685.1.S1_at--695--9331Chr02:11363277..11363301 (25 bp)
TCGCCGACGTGCAGAGGCACTTCCG
LOC_Os02g19450
OsAffx.2685.1.S1_at--298--9051Chr02:11363286..11363310 (25 bp)
TGCAGAGGCACTTCCGGCCGGAGCT
LOC_Os02g19450
OsAffx.2685.1.S1_at--231--9611Chr02:11363310..11363334 (25 bp)
TCATCAGCCGGCTGACGGAGATGGT
LOC_Os02g19450
OsAffx.2685.1.S1_at--819--1311Chr02:11363328..11363352 (25 bp)
AGATGGTGGTGTTCCGGCCGCTGTC
LOC_Os02g19450
OsAffx.2685.1.S1_at--959--8471Chr02:11363373..11363397 (25 bp)
TGGCGAGGCTGCAGCTCCGTGGCAT
LOC_Os02g19450
OsAffx.2685.1.S1_at--1079--7791Chr02:11363469..11363493 (25 bp)
GGTCGAGCGACCAGGTGCGGGCGTA
LOC_Os02g19450
OsAffx.2685.1.S1_at--476--4711Chr02:11363500..11363524 (25 bp)
GCGGCCGATCAAGCGGTGCCTGGAG
LOC_Os02g19450
OsAffx.2685.1.S1_at--44--2931Chr02:11363525..11363549 (25 bp)
AAGGACGTGATGACGAGGATCTCCA
LOC_Os02g19450
OsAffx.2685.1.S1_at--219--1911Chr02:11363529..11363553 (25 bp)
ACGTGATGACGAGGATCTCCAAGAT
LOC_Os02g19450
OsAffx.2685.1.S1_at--223--4251Chr02:11363631..11363655 (25 bp)
CCGTCGACAAGCAGGCAGACGCAGA
LOC_Os02g19450
OsAffx.2685.1.S1_at--220--931Chr02:11363643..11363667 (25 bp)
AGGCAGACGCAGAAGAGAACGACGC
LOC_Os02g19450
Target Sequence 
TCGCCGACGTGCAGAGGCACTTCCGGCCGGAGCTCATCAGCCGGCTGACGGAGATGGTGGTGTTCCGGCCGCTGTCCGGC
GAGCAGCTGCGGAAGGTGGCGAGGCTGCAGCTCCGTGGCATGGCCGCGCGCCTCGCCGAGAAGGGCATCGGCCTCGACGT
CGCCAACGCGGCGCTCGACGTCGTGCTGGCGCGGTCGAGCGACCAGGTGCGGGCGTACGGGGCGCGGCCGATCAAGCGGT
GCCTGGAGAAGGACGTGATGACGAGGATCTCCAAGATGGTGGTGCAGGAGGAGGCGGACGACGACTGCTACGTCACCGTC
GAGGCAGACCAGGGGAAGGAGGAGCTCGTGTTCACCGTCGACAAGCAGGCAGACGCAGAAGAGAACGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis