Browse Element(s) Details


OsAffx.26856.1.S1_at

Description tigr:9633.m01111
TID=OsAffx.26856.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hydroquinone glucosyltransferase (ec 2.4.1.218) (arbutin synthase). (serpentwood, devilpepper
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1245011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12390OsAffx.16290.1.S1_at11/115+7110340..7111502hypothetical protein
LOC_Os05g12400Os.49997.1.S1_at11/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12400Os.28427.2.S1_x_at2/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.1.S1_x_at4/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.2.S1_x_at2/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410OsAffx.26865.1.S1_x_at1/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12420OsAffx.14659.1.S1_at10/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.3.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420Os.27455.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12430NANA5+7124862..7125942retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12440OsAffx.4314.1.S1_at11/115+7128977..7129381expressed protein
LOC_Os05g12450OsAffx.26856.1.S1_at11/115+7131761..7133233UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g12460Os.53011.1.S1_at10/115+7137519..7139032expressed protein
LOC_Os05g12460Os.53011.1.S1_x_at10/115+7137519..7139032expressed protein
LOC_Os05g12474Os.53750.1.S1_at11/115+7140943..7147653expressed protein
LOC_Os05g12474Os.35613.1.S1_at11/115+7140943..7147653expressed protein
LOC_Os05g12474OsAffx.14661.1.S1_s_at11/115+7140943..7147653expressed protein
LOC_Os05g12474OsAffx.14661.1.S1_at3/115+7140943..7147653expressed protein
LOC_Os05g12490Os.52122.1.S1_at11/115+7150499..7155887transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0009808biological_processlignin metabolism
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
GO:0047209molecular_functionconiferyl-alcohol glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26856.1.S1_at--813--1551Chr05:7132692..7132716 (25 bp)
AGCTTAGTCAGCACAGGTTCATTTG
LOC_Os05g12450
OsAffx.26856.1.S1_at--255--6211Chr05:7132726..7132750 (25 bp)
GAGGCCCGACCAAGATACATCGAGT
LOC_Os05g12450
OsAffx.26856.1.S1_at--120--3551Chr05:7132743..7132767 (25 bp)
CATCGAGTGGAGCATTCTTTGGAAC
LOC_Os05g12450
OsAffx.26856.1.S1_at--74--8191Chr05:7132793..7132817 (25 bp)
GGAATGGATTTTTTGCCCGAGGGAT
LOC_Os05g12450
OsAffx.26856.1.S1_at--300--2011Chr05:7132879..7132903 (25 bp)
ACTCGGGCATGCATCAATTGGGTGT
LOC_Os05g12450
OsAffx.26856.1.S1_at--721--3171Chr05:7132894..7132918 (25 bp)
AATTGGGTGTTTCTTGACGCACTGC
LOC_Os05g12450
OsAffx.26856.1.S1_at--345--5111Chr05:7132912..7132936 (25 bp)
GCACTGCGGATGGAACTCTACGCTA
LOC_Os05g12450
OsAffx.26856.1.S1_at--357--2971Chr05:7132949..7132973 (25 bp)
AATGGAGTCCCGATGATCGCATGGC
LOC_Os05g12450
OsAffx.26856.1.S1_at--324--5011Chr05:7132967..7132991 (25 bp)
GCATGGCCACTCTATGCGGAGCAAA
LOC_Os05g12450
OsAffx.26856.1.S1_at--317--2311Chr05:7133023..7133047 (25 bp)
AAAGGTAGCCATCCGGATTAATGTC
LOC_Os05g12450
OsAffx.26856.1.S1_at--729--1331Chr05:7133177..7133201 (25 bp)
AGAGGTTGTTCAATCCTCGCACAAG
LOC_Os05g12450
Target Sequence 
AGCTTAGTCAGCACAGGTTCATTTGGGCTATCAAGAGGCCCGACCAAGATACATCGAGTGGAGCATTCTTTGGAACAGCT
AATAGTAGAGGTGAAGAAGAAGGAATGGATTTTTTGCCCGAGGGATTCATTGAGAGGACTAGAGGGGTGGGGCTTCTGGT
GCCGTCGTGGGCCCCGCAGACATCGATACTCGGGCATGCATCAATTGGGTGTTTCTTGACGCACTGCGGATGGAACTCTA
CGCTAGAGAGTGTTTCCAATGGAGTCCCGATGATCGCATGGCCACTCTATGCGGAGCAAAAGATGAATGCAGCAATGATG
GAGGTTCAAGCAAAGGTAGCCATCCGGATTAATGTCGGAAATGAAAGGTTTATAATGAATGAAGAGATTGCAAATACGAT
AAAACGAGTGATGAAAGGGGAGGAGGCAGAAATGTTGAAGATGCGGATTGGTGAACTCAATGATAAAGCAGTGTATGCAT
TGAGCAGAGGTTGTTCAATCCTCGCACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis