Browse Element(s) Details


OsAffx.26875.1.S1_at

Description tigr:9633.m01222
TID=OsAffx.26875.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=G-patch domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g140407/11D111/G-patch domain-containing protein, putative
LOC_Os04g025002/11G-patch domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14030NANA5+7816536..7816910hypothetical protein
LOC_Os05g14034Os.16349.1.S1_at10/115+7824648..7825593expressed protein
LOC_Os05g14040OsAffx.26875.1.S1_at7/115+7829161..7829576D111/G-patch domain-containing protein, putative
LOC_Os05g14050NANA5+7832249..7834826hypothetical protein
LOC_Os05g14060OsAffx.11259.1.S1_at3/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.1585.1.S1_at2/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.22850.1.S1_x_at1/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14060OsAffx.17107.1.S1_at1/115+7835297..7838058retrotransposon protein, putative, unclassified
LOC_Os05g14070OsAffx.14680.1.S1_at11/115+7842128..7843086hypothetical protein
LOC_Os05g14080OsAffx.14681.1.S1_at11/115+7843586..7845054hypothetical protein
LOC_Os05g14090OsAffx.13127.1.S1_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14090OsAffx.13127.1.S1_x_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14090OsAffx.22699.1.S1_x_at1/115+7847517..7852292retrotransposon protein, putative, unclassified
LOC_Os05g14100Os.31845.1.S1_x_at1/115+7853969..7856906hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26875.1.S1_at--956--412Chr04:897392..897651 (25 bp)
ATCTTGTTTACCTCCATTGCGCTAC
LOC_Os04g02500
OsAffx.26875.1.S1_at--358--2532Chr04:897423..897447 (25 bp)
AACTTTTCAAACTACACTGTCAGCA
LOC_Os04g02500
OsAffx.26875.1.S1_at--403--2191Chr05:7829292..7829316 (25 bp)
ACACTTGACTCATATATTCCCCTAA
LOC_Os05g14040
OsAffx.26875.1.S1_at--658--10191Chr05:7829280..7829304 (25 bp)
TATATTCCCCTAATTTCAATCGACC
LOC_Os05g14040
OsAffx.26875.1.S1_at--44--5831Chr05:7829259..7829283 (25 bp)
GACCCCTAATCCTAGATTCCAAATC
LOC_Os05g14040
OsAffx.26875.1.S1_at--297--2271Chr05:7829239..7829263 (25 bp)
AAATCTGTGACTTGGTGTTTACCTA
LOC_Os05g14040
OsAffx.26875.1.S1_at--955--9971Chr05:7829220..7829244 (25 bp)
TACCTATATGGTGCAGCTTGGCTGC
LOC_Os05g14040
OsAffx.26875.1.S1_at--968--5471Chr05:7829093..7829117 (25 bp)
GAACTATTTGCCTGTACCTATGCTA
NONE
OsAffx.26875.1.S1_at--1095--6971Chr05:7829080..7829104 (25 bp)
GTACCTATGCTAGACTGTTACTAAT
NONE
OsAffx.26875.1.S1_at--933--7851Chr05:7829029..7829053 (25 bp)
GGTAGTTCAATTCTCTATACTGCAT
NONE
OsAffx.26875.1.S1_at--605--5591Chr05:7828998..7829022 (25 bp)
GAAATCTTGTTTCAGATGGCAGACA
NONE
Target Sequence 
ATCTTGTTTACCTCCATTGCGCTACACCCCTAACTTTTCAAACTACACTGTCAGCAACAACTTAATGTTAGAACACTTGA
CTCATATATTCCCCTAATTTCAATCGACCCCTAATCCTAGATTCCAAATCTGTGACTTGGTGTTTACCTATATGGTGCAG
CTTGGCTGCTCTGCAGCACGGTCCAGGCCCCAGGGCAATACCAGCTGCACTGCACCCAGTTCAACTGATTCAATAGTTCT
GCTAAACTGTTGATGGAAGTTCTCCATCATGGAACTATTTGCCTGTACCTATGCTAGACTGTTACTAATAATCATGTTTC
AGATGTGATATATTAGGTAGTTCAATTCTCTATACTGCATATACTAGAAATCTTGTTTCAGATGGCAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis