Browse Element(s) Details


OsAffx.26897.1.S1_at

Description tigr:9633.m01315
TID=OsAffx.26897.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1495011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14900OsAffx.26894.1.S1_at11/115+8439795..8441746expressed protein
LOC_Os05g14920OsAffx.14701.1.S1_at11/115+8451292..8451924hypothetical protein
LOC_Os05g14930OsAffx.26896.1.S1_at11/115+8454704..8457403expressed protein
LOC_Os05g14940Os.7726.1.S1_at4/115+8458227..8462086hAT family dimerisation domain containing protein, expressed
LOC_Os05g14940OsAffx.26780.1.S1_at1/115+8458227..8462086hAT family dimerisation domain containing protein, expressed
LOC_Os05g14950OsAffx.26897.1.S1_at11/115+8461716..8463394hypothetical protein
LOC_Os05g14960OsAffx.26898.1.S1_at11/115+8467470..8468034hypothetical protein
LOC_Os05g14970OsAffx.4341.1.S1_at11/115+8471366..8473983hypothetical protein
LOC_Os05g14980OsAffx.4342.1.S1_at6/115+8476843..8480270hypothetical protein
LOC_Os05g14990NANA5+8486485..8486691hypothetical protein
LOC_Os05g15000OsAffx.4343.1.S1_at11/115+8488326..8488820hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26897.1.S1_at--91--251Chr05:8461764..8461788 (25 bp)
ATATCAACTGCTATGCTTCTGTCCA
LOC_Os05g14950
OsAffx.26897.1.S1_at--365--10131Chr05:8461775..8461799 (25 bp)
TATGCTTCTGTCCACACACGAGAAG
LOC_Os05g14950
OsAffx.26897.1.S1_at--67--1011Chr05:8461811..8461835 (25 bp)
AGGATCAAGGTGTACCTGGTGCCGT
LOC_Os05g14950
OsAffx.26897.1.S1_at--131--2751Chr05:8461849..8461873 (25 bp)
AAGAAGACTGTTTCGACTCTGTGCA
LOC_Os05g14950
OsAffx.26897.1.S1_at--597--5711Chr05:8461863..8461887 (25 bp)
GACTCTGTGCAGCACTGTACAGCGG
LOC_Os05g14950
OsAffx.26897.1.S1_at--932--4251Chr05:8462033..8462057 (25 bp)
CCGGCGCGCGACGAGACAACAAGGA
LOC_Os05g14950
OsAffx.26897.1.S1_at--679--1711Chr05:8462722..8462746 (25 bp)
ACCAGCCCATGCACATGAAGGCGGT
LOC_Os05g14950
OsAffx.26897.1.S1_at--890--8991Chr05:8462737..8462761 (25 bp)
TGAAGGCGGTGTCACTCAGCTTCAT
LOC_Os05g14950
OsAffx.26897.1.S1_at--963--3531Chr05:8462759..8462783 (25 bp)
CATCCTCGCGCGTGTTGACGAGAAA
LOC_Os05g14950
OsAffx.26897.1.S1_at--661--1671Chr05:8463299..8463323 (25 bp)
ACCGTAGACGCGATGGTTGTTGCCA
LOC_Os05g14950
OsAffx.26897.1.S1_at--132--5971Chr05:8463340..8463364 (25 bp)
GAGAAGGCGCGGTTGCGATCCTATC
LOC_Os05g14950
Target Sequence 
ATATCAACTGCTATGCTTCTGTCCACACACGAGAAGCGGGTGAGGAGAGGATCAAGGTGTACCTGGTGCCGTGGATCTGG
GCTTGAAGAAGACTGTTTCGACTCTGTGCAGCACTGTACAGCGGGGATGAAGGGAGGAGGCGCCTGCACCGAGGATGGAA
GGGAGGCGGCGCCGGCACTGGGAAGGAAGGGGATGCGGTGCCTTAGGGGAAGCAGGCGGATGCGGTGGGAGGCGCTGGCG
CCGCCGCCGGTGCGCGACGAGAGGAGGCGCCGGCGCGCGACGAGACAACAAGGAGAGGCGGCGCGGGAGCCGCTCGAGAA
GAGAAGACGGGAGGCGGCCCGGAGTGGTGGATTTCCACCGCGCCCACCCTTCCAGCACCAGCCCATGCACATGAAGGCGG
TGTCACTCAGCTTCATCCTCGCGCGTGTTGACGAGAAACACGGTAGTCTGGGAGATATGCTTAACTTCAGTGCAGATGGG
AAAGGGGTGGCAACCGTAGACGCGATGGTTGTTGCCAAGGAGTGCCAAGTGGGGAGAAGGCGCGGTTGCGATCCTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis