Browse Element(s) Details


OsAffx.26910.1.S1_at

Description tigr:9633.m01392
TID=OsAffx.26910.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1570011/11hypothetical protein
LOC_Os03g134901/11expressed protein
LOC_Os05g476601/11Lipid phosphate phosphatase 2, putative, expressed
LOC_Os04g228001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15640NANA5+8830657..8831369retrotransposon, putative, centromere-specific
LOC_Os05g15650OsAffx.4349.1.S1_x_at10/115+8831782..8832888hypothetical protein
LOC_Os05g15650OsAffx.4349.1.S1_at10/115+8831782..8832888hypothetical protein
LOC_Os05g15660OsAffx.25367.1.S1_at1/115+8836688..8839197retrotransposon, putative, centromere-specific
LOC_Os05g15670OsAffx.29943.1.S1_at11/115+8844175..8844757hypothetical protein
LOC_Os05g15670OsAffx.29943.2.S1_x_at1/115+8844175..8844757hypothetical protein
LOC_Os05g15680OsAffx.14711.1.S1_at7/115+8848400..8849353hypothetical protein
LOC_Os05g15690Os.54019.1.S1_at11/115+8849664..8851242Beta-expansin 2 precursor, putative, expressed
LOC_Os05g15700OsAffx.26910.1.S1_at11/115+8853370..8853961hypothetical protein
LOC_Os05g15710OsAffx.14712.1.S1_at11/115+8856774..8857482hypothetical protein
LOC_Os05g15720OsAffx.4350.1.S1_at11/115+8858672..8865870Protein kinase domain containing protein, expressed
LOC_Os05g15730OsAffx.26912.1.S1_at10/115+8866184..8868699hypothetical protein
LOC_Os05g15730OsAffx.2711.1.S1_x_at1/115+8866184..8868699hypothetical protein
LOC_Os05g15740OsAffx.26912.2.S1_at11/115+8869084..8869610hypothetical protein
LOC_Os05g15740OsAffx.26912.2.S1_x_at11/115+8869084..8869610hypothetical protein
LOC_Os05g15750OsAffx.18924.2.S1_x_at1/115+8870075..8874110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15750OsAffx.19421.2.S1_at1/115+8870075..8874110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15760NANA5+8876452..8877561transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006644biological_processphospholipid metabolism
GO:0006950biological_processresponse to stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0005887cellular_componentintegral to plasma membrane
GO:0008195molecular_functionphosphatidate phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26910.1.S1_at--480--9411Chr05:8853889..8853913 (25 bp)
TCGTCGGAGTCGTTCCACGCGTCCT
LOC_Os05g15700
OsAffx.26910.1.S1_at--184--3311Chr05:8853874..8853898 (25 bp)
CACGCGTCCTCATGTTACCGAAAGG
LOC_Os05g15700
OsAffx.26910.1.S1_at--259--1191Chr05:8853864..8853888 (25 bp)
CATGTTACCGAAAGGCCGAAGACGC
LOC_Os05g15700
OsAffx.26910.1.S1_at--816--4111Chr05:8853848..8853872 (25 bp)
CGAAGACGCCACCTACGCTGTTGTC
LOC_Os05g15700
OsAffx.26910.1.S1_at--778--5051Chr05:8853746..8853770 (25 bp)
GCAGCAAGGTGGTAGCGCCCATCCA
LOC_Os05g15700
OsAffx.26910.1.S1_at--915--9951Chr05:8853734..8853758 (25 bp)
TAGCGCCCATCCAGGAGTTAGTGTC
LOC_Os05g15700
OsAffx.26910.1.S1_at--913--10053Chr05:8853716..8853740 (25 bp)
TAGTGTCTGGGCTGAGGATCTCCGC
LOC_Os05g15700
OsAffx.26910.1.S1_at--620--3331Chr05:8853442..8853466 (25 bp)
CACGTCAACGAAACTGGGTATCCAA
LOC_Os05g15700
OsAffx.26910.1.S1_at--377--2571Chr05:8853431..8853455 (25 bp)
AACTGGGTATCCAACTGCTATCGGA
LOC_Os05g15700
OsAffx.26910.1.S1_at--254--9211Chr05:8853422..8853446 (25 bp)
TCCAACTGCTATCGGACCCAAATTG
LOC_Os05g15700
OsAffx.26910.1.S1_at--480--58113Chr07:8858926..8858945 (20 bp)
GACCCAAATTGCACGGTTTTATATA
NONE
Target Sequence 
TCGTCGGAGTCGTTCCACGCGTCCTCATGTTACCGAAAGGCCGAAGACGCCACCTACGCTGTTGTCTCCCGCATGCTCGG
CTTCTCTACCGTCCCTCGCCGCCTGCGTGCTACGGACGTGGCGACGGCGCCGCACCGCCGCCGGCAGCAAGGTGGTAGCG
CCCATCCAGGAGTTAGTGTCTGGGCTGAGGATCTCCGCCTGGAGGAGACCGGCGGCCTCTCCCCTCTCACCCGTCGGCGC
GGCTGGCCTCTTCTCCCCCTTCTCCCACCGGATGCCACGTCAACGAAACTGGGTATCCAACTGCTATCGGACCCAAATTG
CACGGTTTTATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis