Browse Element(s) Details


OsAffx.26912.1.S1_at

Description tigr:9633.m01395
TID=OsAffx.26912.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1573010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15670OsAffx.29943.1.S1_at11/115+8844175..8844757hypothetical protein
LOC_Os05g15670OsAffx.29943.2.S1_x_at1/115+8844175..8844757hypothetical protein
LOC_Os05g15680OsAffx.14711.1.S1_at7/115+8848400..8849353hypothetical protein
LOC_Os05g15690Os.54019.1.S1_at11/115+8849664..8851242Beta-expansin 2 precursor, putative, expressed
LOC_Os05g15700OsAffx.26910.1.S1_at11/115+8853370..8853961hypothetical protein
LOC_Os05g15710OsAffx.14712.1.S1_at11/115+8856774..8857482hypothetical protein
LOC_Os05g15720OsAffx.4350.1.S1_at11/115+8858672..8865870Protein kinase domain containing protein, expressed
LOC_Os05g15730OsAffx.26912.1.S1_at10/115+8866184..8868699hypothetical protein
LOC_Os05g15730OsAffx.2711.1.S1_x_at1/115+8866184..8868699hypothetical protein
LOC_Os05g15740OsAffx.26912.2.S1_at11/115+8869084..8869610hypothetical protein
LOC_Os05g15740OsAffx.26912.2.S1_x_at11/115+8869084..8869610hypothetical protein
LOC_Os05g15750OsAffx.18924.2.S1_x_at1/115+8870075..8874110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15750OsAffx.19421.2.S1_at1/115+8870075..8874110transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15760NANA5+8876452..8877561transposon protein, putative, unclassified
LOC_Os05g15770Os.37717.1.A2_s_at11/115+8881795..8883090Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15770Os.37717.1.A1_s_at11/115+8881795..8883090Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os05g15780OsAffx.26913.1.S1_at11/115+8885375..8886080hypothetical protein
LOC_Os05g15790OsAffx.14713.1.S1_at10/115+8890086..8890606hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26912.1.S1_at--937--8011NONE
GGAGGAGTATTGCAACACAAGGCTA
NONE
OsAffx.26912.1.S1_at--403--9011Chr05:8866800..8866824 (25 bp)
TGCAACACAAGGCTACTGCCATTCC
LOC_Os05g15730
OsAffx.26912.1.S1_at--680--2211Chr05:8866767..8866791 (25 bp)
ACAAGAAGCTATCAGTGGACGAGCA
LOC_Os05g15730
OsAffx.26912.1.S1_at--466--2911Chr05:8866480..8866573 (25 bp)
AAGGATCTGGGCGTAAGCGTCATGC
LOC_Os05g15730
OsAffx.26912.1.S1_at--332--8011Chr05:8866451..8866475 (25 bp)
GGAGGTTTTCAACAAGCTCAACTTC
LOC_Os05g15730
OsAffx.26912.1.S1_at--1121--2391Chr05:8866411..8866435 (25 bp)
AAACAGATGCGCCTGCTACTGGCTG
LOC_Os05g15730
OsAffx.26912.1.S1_at--541--4851Chr05:8866397..8866421 (25 bp)
GCTACTGGCTGATTCATCGGTCCGT
LOC_Os05g15730
OsAffx.26912.1.S1_at--382--3651Chr05:8866310..8866334 (25 bp)
CTTCGTGATACTGGATATGGAGTCA
LOC_Os05g15730
OsAffx.26912.1.S1_at--242--351Chr05:8866284..8866308 (25 bp)
ATAAAGAGACGCCAGTTATCCTGGG
LOC_Os05g15730
OsAffx.26912.1.S1_at--733--7451Chr05:8866259..8866283 (25 bp)
GTGTCCGTTTCCTAGCACCTCGGAG
LOC_Os05g15730
OsAffx.26912.1.S1_at--728--1751Chr05:8866243..8866267 (25 bp)
ACCTCGGAGGCCAACATAGACGTGG
LOC_Os05g15730
Target Sequence 
GGAGGAGTATTGCAACACAAGGCTACTGCCATTCCCCAGAGACACAAGAAGCTATCAGTGGACGAGCAGTTCGTTCGTTT
TGTTGAGGTGATCCAAAAGATCCACATACACGTGCCGCTGTTGGATGCCATGCAAGAGCCCACCTATGCACGGTATCTCA
AGGATATCCTCAACAACAAGAGGCCACTACCGACAACTGAGGTGGTCAAGCTGATGGAGGAATACAGCAATGCCATACTC
CACAAGCTCCCCAAAAAGAAGAAGGATCTGGGCGTAAGCGTCATGCCCAAGGAGGTTTTCAACAAGCTCAACTTCACGGT
GTTGGCACCAAAACAGATGCGCCTGCTACTGGCTGATTCATCGGTCCGTTACCCAGCTGGGATAGCGGAGGATGTGCCGG
TTAAGATACGGGATTTCTTCATCCCGGTTGACTTCGTGATACTGGATATGGAGTCAGATAAAGAGACGCCAGTTATCCTG
GGGTGTCCGTTTCCTAGCACCTCGGAGGCCAACATAGACGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis