Browse Element(s) Details


OsAffx.26970.1.S1_at

Description tigr:9633.m01990
TID=OsAffx.26970.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2263010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g22590NANA5+12744891..12747272retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g22600OsAffx.31462.2.S1_at11/115+12747728..12753150hypothetical protein
LOC_Os05g22614Os.10522.2.S1_at11/115+12755754..12761715expressed protein
LOC_Os05g22614Os.10522.1.S1_at11/115+12755754..12761715expressed protein
LOC_Os05g22614Os.10522.2.S1_x_at11/115+12755754..12761715expressed protein
LOC_Os05g22630OsAffx.26970.1.S1_at10/115+12766613..12768414hypothetical protein
LOC_Os05g22640NANA5+12770438..12771166hypothetical protein
LOC_Os05g22650Os.45212.1.S1_x_at8/115+12773649..12779882retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22660OsAffx.25156.2.S1_x_at2/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.1.S1_x_at2/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.5.S1_x_at1/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.4.S1_x_at1/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22670Os.4951.1.S1_at10/115+12788250..12794695Transcription factor IIA, alpha/beta subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26970.1.S1_at--523--5071NONE
GCAGCGGTGATTACTTCTGTAACCA
NONE
OsAffx.26970.1.S1_at--521--8711Chr05:12768150..12768174 (25 bp)
TGTAACCATAAACCAGAACCGCCAT
LOC_Os05g22630
OsAffx.26970.1.S1_at--342--151Chr05:12768173..12768197 (25 bp)
ATTATCCTCGCCACCAAACAAGCAA
LOC_Os05g22630
OsAffx.26970.1.S1_at--196--2211Chr05:12768190..12768214 (25 bp)
ACAAGCAACCGACCAACAGGTGGCC
LOC_Os05g22630
OsAffx.26970.1.S1_at--847--4391Chr05:12768233..12768257 (25 bp)
GCCAAGAGAAACAAGCCGCGGGTAA
LOC_Os05g22630
OsAffx.26970.1.S1_at--346--7071Chr05:12768254..12768278 (25 bp)
GTAAGGACAACCGAGCTGGCTCTAG
LOC_Os05g22630
OsAffx.26970.1.S1_at--1086--1751Chr05:12768263..12768287 (25 bp)
ACCGAGCTGGCTCTAGGAAAAGGCC
LOC_Os05g22630
OsAffx.26970.1.S1_at--296--5351Chr05:12768316..12768340 (25 bp)
GAAGACTCGAATGACCAGACAACTG
LOC_Os05g22630
OsAffx.26970.1.S1_at--522--2991Chr05:12768325..12768349 (25 bp)
AATGACCAGACAACTGGCCCGACTA
LOC_Os05g22630
OsAffx.26970.1.S1_at--371--4531Chr05:12768341..12768365 (25 bp)
GCCCGACTACTTCTGCCCGGAAGAA
LOC_Os05g22630
OsAffx.26970.1.S1_at--774--10531Chr05:12768351..12768375 (25 bp)
TTCTGCCCGGAAGAAACTAGGGTAT
LOC_Os05g22630
Target Sequence 
GCAGCGGTGATTACTTCTGTAACCATAAACCAGAACCGCCATTATCCTCGCCACCAAACAAGCAACCGACCAACAGGTGG
CCCAACCATCAACCCTGCTGGCCAAGAGAAACAAGCCGCGGGTAAGGACAACCGAGCTGGCTCTAGGAAAAGGCCAAGAA
AATTGATCATCGATGATGATGATGAAGACTCGAATGACCAGACAACTGGCCCGACTACTTCTGCCCGGAAGAAACTAGGG
TAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis