Browse Element(s) Details


Os.4951.1.S1_at

Description gb:AK065373.1
DB_XREF= gi:32975391
TID=Os.4951.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022M09, full insert sequence.
FL= gb:AK065373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2267010/11Transcription factor IIA, alpha/beta subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g22630OsAffx.26970.1.S1_at10/115+12766613..12768414hypothetical protein
LOC_Os05g22640NANA5+12770438..12771166hypothetical protein
LOC_Os05g22650Os.45212.1.S1_x_at8/115+12773649..12779882retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22660OsAffx.25156.2.S1_x_at2/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.1.S1_x_at2/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.5.S1_x_at1/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22660OsAffx.25156.4.S1_x_at1/115+12780789..12783940retrotransposon protein, putative, unclassified
LOC_Os05g22670Os.4951.1.S1_at10/115+12788250..12794695Transcription factor IIA, alpha/beta subunit family protein, expressed
LOC_Os05g22680OsAffx.12157.1.S1_at1/115+12800481..12801328retrotransposon protein, putative, unclassified
LOC_Os05g22690OsAffx.2719.1.S1_at2/115+12803008..12803511retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22700OsAffx.11392.2.S1_x_at3/115+12803770..12805178retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22710OsAffx.32332.1.S1_x_at11/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22710OsAffx.32333.1.S1_x_at11/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22710OsAffx.32331.1.S1_x_at7/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22710OsAffx.32334.1.S1_x_at5/115+12808933..12810702DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g22730Os.25561.1.S1_at10/115+12818200..12819117one helix protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4951.1.S1_at--247--8871Chr05:12793448..12793472 (25 bp)
TGATGATGAGCCTCCGCTTAATGAA
LOC_Os05g22670
Os.4951.1.S1_at--550--7991Chr05:12793517..12793541 (25 bp)
GGATGAGCCTAACACACAGCACCTT
LOC_Os05g22670
Os.4951.1.S1_at--627--1731Chr05:12793537..12793561 (25 bp)
ACCTTGTCCTCGCACAGTTTGACAA
LOC_Os05g22670
Os.4951.1.S1_at--90--5451Chr05:12793671..12793695 (25 bp)
GAACCGCTGGAAATGCACTTTGAAG
LOC_Os05g22670
Os.4951.1.S1_at--1042--2291Chr05:12793713..12793737 (25 bp)
AAATGGCCGAGATGTTCTATTCAAC
LOC_Os05g22670
Os.4951.1.S1_at--907--6711NONE
GTTCTATTCAACAAGGCTACCGGCG
NONE
Os.4951.1.S1_at--616--8311Chr05:12794355..12794379 (25 bp)
GGCTACCGGCGAATTTGATTTTTGA
LOC_Os05g22670
Os.4951.1.S1_at--126--5411Chr05:12794407..12794431 (25 bp)
GAAGCTGCTGTATCGACATATCTTT
LOC_Os05g22670
Os.4951.1.S1_at--1045--6731Chr05:12794519..12794543 (25 bp)
GTTACCGTAACTGTTATCGCTGTAA
LOC_Os05g22670
Os.4951.1.S1_at--328--5731Chr05:12794563..12794587 (25 bp)
GACTGTTGTAGACATTTTCCTGAGA
LOC_Os05g22670
Os.4951.1.S1_at--170--6171Chr05:12794608..12794632 (25 bp)
GAGGATTACCTTGTCTGATTTGTGT
LOC_Os05g22670
Target Sequence 
TGATGATGAGCCTCCGCTTAATGAAGATGACGATGATGATGATGAGTTAGATGACCTTGAGCAAGGGGAGGATGAGCCTA
ACACACAGCACCTTGTCCTCGCACAGTTTGACAAAGTGACAAGGACAAAGAACCGCTGGAAATGCACTTTGAAGGATGGA
ATCATGCATTTAAATGGCCGAGATGTTCTATTCAACAAGGCTACCGGCGAATTTGATTTTTGAATTTTGTGACAAAGAGG
AGCTATTTTAGAAGCTGCTGTATCGACATATCTTTGTCTTTGACATAAGAGTGGGGAATGACAAAAGCACTGGTGGGGGG
TGGGTTTGTTCCTGTGGAGGCTTTGCTCTACCCAGTGGGTTTGTTACCGTAACTGTTATCGCTGTAAAAAAAAATGCTAC
AGTTGGGACTGTTGTAGACATTTTCCTGAGATGGTTATCTTAAAGTTGGCGGAGGATTACCTTGTCTGATTTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis