Browse Element(s) Details


OsAffx.26987.1.S1_at

Description tigr:9633.m02104
TID=OsAffx.26987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2368010/11hypothetical protein
LOC_Os02g564101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g085641/11expressed protein
LOC_Os09g098501/11heavy metal-associated domain containing protein
LOC_Os07g184501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23650OsAffx.14791.1.S1_at11/115+13487760..13488479hypothetical protein
LOC_Os05g23660Os.53933.1.S1_at1/115+13490956..13494890transposon protein, putative, Pong sub-class
LOC_Os05g23670Os.49210.1.S1_at11/115+13495777..13501573jmjC domain containing protein, expressed
LOC_Os05g23680OsAffx.26987.1.S1_at10/115+13510964..13519005hypothetical protein
LOC_Os05g23690OsAffx.4407.1.S1_at10/115+13521472..13522913hypothetical protein
LOC_Os05g23700Os.16460.1.S1_at11/115+13528318..13529695DNA-binding storekeeper protein, putative, expressed
LOC_Os05g23720Os.11624.1.S1_at11/115+13532510..13536360ADP,ATP carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g23710OsAffx.14792.1.S1_at11/115+13535956..13537345hypothetical protein
LOC_Os05g23724NANA5+13541827..13542203NA
LOC_Os05g23740Os.9688.1.S1_at11/115+13543698..13549023Stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26987.1.S1_at--1005--9931Chr05:13517210..13517234 (25 bp)
TACGATAGGACATCAAGCACACATG
LOC_Os05g23680
OsAffx.26987.1.S1_at--465--103915Chr12:22124088..22124109 (22 bp)
TTATACTGGTTCAGGTCCCTTGCGA
NONE
OsAffx.26987.1.S1_at--1120--311Chr05:13517164..13517188 (25 bp)
AGGTCCCTTGCGAGGAAGCCCTAAT
LOC_Os05g23680
OsAffx.26987.1.S1_at--107--61940Chr11:15310327..15310346 (20 bp)
GAGGAAGCCCTAATCCAGTTTATAT
NONE
OsAffx.26987.1.S1_at--598--10031Chr05:13517097..13517121 (25 bp)
TAGAGAACAATGGAACCCTGAGATT
LOC_Os05g23680
OsAffx.26987.1.S1_at--507--8171Chr05:13517086..13517110 (25 bp)
GGAACCCTGAGATTGCCGACGAGAT
LOC_Os05g23680
OsAffx.26987.1.S1_at--818--1271Chr05:13517065..13517089 (25 bp)
AGATCCCTATCAAGAACGGCTCGAC
LOC_Os05g23680
OsAffx.26987.1.S1_at--614--4215Chr11:18477387..18477409 (23 bp)
CCGCCTGCTTCTTGACTGCTAATAA
NONE
OsAffx.26987.1.S1_at--691--5032Chr03:17830256..17830377 (24 bp)
GCAGATCTCCCAGGTTTGGCTTCCA
NONE
OsAffx.26987.1.S1_at--698--991NONE
AGGTTTGACGGGTGCTCAGATTGTT
NONE
OsAffx.26987.1.S1_at--444--10791Chr05:13512521..13512545 (25 bp)
TTGTTGGAATGGTTGCAGAAGCACT
LOC_Os05g23680
Target Sequence 
TACGATAGGACATCAAGCACACATGAGACAAAGATTATACTGGTTCAGGTCCCTTGCGAGGAAGCCCTAATCCAGTTTAT
ATGGGATTATGGAGAAAACCATATAGATTATAATAGAGAACAATGGAACCCTGAGATTGCCGACGAGATCCCTATCAAGA
ACGGCTCGACGAGATCCACCGCCTGCTTCTTGACTGCTAATAAGGGTTTCATCGGGGTTTCAGCCAATGAGGATCAAACT
GACTGGCACGCTCGCATATCATCAAGATTTGGACCTGCACTGGAGCTAAGCAGATCTCCCAGGTTTGGCTTCCACCTTAC
CCATTCCTTAACTAGGGGATTTGGAGGTTTGACGGGTGCTCAGATTGTTGGAATGGTTGCAGAAGCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis