Browse Element(s) Details


OsAffx.26991.1.S1_at

Description tigr:9633.m02129
TID=OsAffx.26991.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2392410/11Glycosyl hydrolase family 10 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23880Os.27405.1.S1_at9/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23880OsAffx.10342.1.S1_x_at1/115+13656584..13662481Lipoxygenase family protein, expressed
LOC_Os05g23890NANA5+13662507..13664470retrotransposon protein, putative, LINE subclass
LOC_Os05g23900OsAffx.26989.1.S1_at11/115+13667941..13668614hypothetical protein
LOC_Os05g23910OsAffx.26990.1.S1_at11/115+13671818..13673285Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g23910Os.24936.1.A1_at9/115+13671818..13673285Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os05g23924Os.9795.1.S1_at11/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23924OsAffx.26991.1.S1_at10/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23924Os.12284.1.S1_at1/115+13677444..13685352Glycosyl hydrolase family 10 protein, expressed
LOC_Os05g23940Os.12931.1.S1_at11/115+13694317..13703825Transcription factor TFIIB repeat family protein, expressed
LOC_Os05g23950Os.53153.1.S1_at7/115+13705855..13707029TRAF-type zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26991.1.S1_at--61--9051Chr05:13685192..13685216 (25 bp)
TGCAGATCGGAAGGCTTTGCTCTTG
LOC_Os05g23924
OsAffx.26991.1.S1_at--1097--4271Chr05:13685017..13685148 (25 bp)
CCTCCGATGGAGTGCGCTATGATTA
LOC_Os05g23924
OsAffx.26991.1.S1_at--828--6111Chr05:13684719..13684742 (24 bp)
GAGTGCAAATCGCATCCTGAACCTG
LOC_Os05g23924
OsAffx.26991.1.S1_at--1017--5431Chr05:13684701..13684725 (25 bp)
GAACCTGCACTGTACAACGGTGGCA
LOC_Os05g23924
OsAffx.26991.1.S1_at--1051--4971Chr05:13684679..13684703 (25 bp)
GCATCCTGCGCTGGGCGAACAAAGT
LOC_Os05g23924
OsAffx.26991.1.S1_at--204--8111Chr05:13684636..13684660 (25 bp)
GGACGATGGCAACTATTCGCCGGCA
LOC_Os05g23924
OsAffx.26991.1.S1_at--1014--91Chr05:13684622..13684646 (25 bp)
ATTCGCCGGCATTTGTGCTGTATAA
LOC_Os05g23924
OsAffx.26991.1.S1_at--884--4731Chr05:13684606..13684630 (25 bp)
GCTGTATAATATGTCCGCGGCAACA
LOC_Os05g23924
OsAffx.26991.1.S1_at--120--4691Chr05:13684590..13684614 (25 bp)
GCGGCAACAGTATACAGCTTCTCCT
LOC_Os05g23924
OsAffx.26991.1.S1_at--309--2151NONE
ACAGCTTCTCCTTGAATGACGGCAA
NONE
OsAffx.26991.1.S1_at--453--5731Chr05:13684052..13684076 (25 bp)
GACGGCAAAGGGTATCTTGGCGAAC
LOC_Os05g23924
Target Sequence 
TGCAGATCGGAAGGCTTTGCTCTTGCTGCTGCTGCTGCTCATCGTCTTGCTAGCTCGCCCTGCTGCATCCTCCGATGGAG
TGCGCTATGATTACAGAGCTTACACTGAGTGCAAATCGCATCCTGAACCTGCACTGTACAACGGTGGCATCCTGCGCTGG
GCGAACAAAGTGACGGACTTCAGAACAGAGGACGATGGCAACTATTCGCCGGCATTTGTGCTGTATAATATGTCCGCGGC
AACAGTATACAGCTTCTCCTTGAATGACGGCAAAGGGTATCTTGGCGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis