Browse Element(s) Details


OsAffx.2710.1.S1_at

Description tigr:9630.m02089
TID=OsAffx.2710.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2176010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21720OsAffx.23366.2.S1_s_at1/112+12908783..12912373transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21730Os.45173.1.S1_x_at4/112+12914264..12917866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21730Os.46314.3.S1_at2/112+12914264..12917866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21730OsAffx.7362.1.S1_x_at1/112+12914264..12917866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21740OsAffx.9790.1.S1_x_at1/112+12919172..12921972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21740OsAffx.8338.1.S1_x_at1/112+12919172..12921972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21750Os.51901.1.S1_at11/112+12923846..12927799ABC transporter family protein, expressed
LOC_Os02g21760OsAffx.2710.1.S1_at10/112+12936339..12936895hypothetical protein
LOC_Os02g21770NANA2+12940359..12940869hypothetical protein
LOC_Os02g21780OsAffx.1646.1.S1_x_at1/112+12944745..12946019retrotransposon protein, putative, unclassified
LOC_Os02g21790OsAffx.10496.1.S1_at4/112+12946349..12949208retrotransposon protein, putative, unclassified
LOC_Os02g21790OsAffx.20628.1.S1_at1/112+12946349..12949208retrotransposon protein, putative, unclassified
LOC_Os02g21800OsAffx.2711.1.S1_at11/112+12954659..12954946hypothetical protein
LOC_Os02g21800OsAffx.2711.1.S1_x_at11/112+12954659..12954946hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2710.1.S1_at--1035--5551Chr02:12936399..12936423 (25 bp)
GAAAGCTTCTTTCTTGAATATCAAG
LOC_Os02g21760
OsAffx.2710.1.S1_at--477--5231Chr02:12936414..12936438 (25 bp)
GAATATCAAGAACCTTGCTCTCTTA
LOC_Os02g21760
OsAffx.2710.1.S1_at--533--3631Chr02:12936427..12936451 (25 bp)
CTTGCTCTCTTAAGGTATCTTCAGA
LOC_Os02g21760
OsAffx.2710.1.S1_at--32--7871Chr02:12936440..12936464 (25 bp)
GGTATCTTCAGAGTCTGCCACATTT
LOC_Os02g21760
OsAffx.2710.1.S1_at--865--1151Chr02:12936451..12936475 (25 bp)
AGTCTGCCACATTTTGTGCCACGAG
LOC_Os02g21760
OsAffx.2710.1.S1_at--978--3311Chr02:12936470..12936494 (25 bp)
CACGAGCACATTGAACCACCTTAAG
LOC_Os02g21760
OsAffx.2710.1.S1_at--1042--8971Chr02:12936481..12936505 (25 bp)
TGAACCACCTTAAGGTCCTCACCGG
LOC_Os02g21760
OsAffx.2710.1.S1_at--267--8991Chr02:12936627..12936651 (25 bp)
TGAAGCTAGGGACTACATCACCAAT
LOC_Os02g21760
OsAffx.2710.1.S1_at--86--391NONE
ATCACCAATGGTGGCTGCAACGTTA
NONE
OsAffx.2710.1.S1_at--804--1471Chr02:12936828..12936852 (25 bp)
AGAATGATGGTCATGCGATGCCCAA
LOC_Os02g21760
OsAffx.2710.1.S1_at--713--9131Chr02:12936841..12936865 (25 bp)
TGCGATGCCCAAGAACGCGGGAGAT
LOC_Os02g21760
Target Sequence 
GAAAGCTTCTTTCTTGAATATCAAGAACCTTGCTCTCTTAAGGTATCTTCAGAGTCTGCCACATTTTGTGCCACGAGCAC
ATTGAACCACCTTAAGGTCCTCACCGGAAAAATGTTTAAAAGCTACAACTTCAACGATGAATCAACAATTGATGGTGAAG
CTAGGGACTACATCACCAATGGTGGCTGCAACGTTAAGATTAAAAAGAATGATGGTCATGCGATGCCCAAGAACGCGGGA
GAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis