Browse Element(s) Details


OsAffx.27157.1.S1_at

Description tigr:9633.m03186
TID=OsAffx.27157.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g343909/11S-locus glycoprotein family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34350Os.31535.1.A1_at5/115+20274409..20281035transposon protein, putative, unclassified
LOC_Os05g34350Os.50591.1.S1_at3/115+20274409..20281035transposon protein, putative, unclassified
LOC_Os05g34350OsAffx.22945.1.S1_at1/115+20274409..20281035transposon protein, putative, unclassified
LOC_Os05g34360NANA5+20282112..20282456hypothetical protein
LOC_Os05g34370OsAffx.31069.1.S1_x_at1/115+20283113..20285164retrotransposon protein, putative, unclassified
LOC_Os05g34380OsAffx.14957.1.S1_at11/115+20296312..20297966Cytochrome P450 51, putative
LOC_Os05g34390OsAffx.27157.1.S1_at9/115+20300884..20307630S-locus glycoprotein family protein
LOC_Os05g34390Os.55243.1.S1_at1/115+20300884..20307630S-locus glycoprotein family protein
LOC_Os05g34400OsAffx.27158.1.S1_at11/115+20309959..20310694hypothetical protein
LOC_Os05g34410Os.47463.1.S1_x_at1/115+20312725..20313656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34410Os.14491.2.S1_x_at1/115+20312725..20313656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34420NANA5+20314032..20316458transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34429NANA5+20317032..20317464NA
LOC_Os05g34440Os.46306.1.S1_x_at3/115+20318570..20322355transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34450OsAffx.23944.2.S1_at11/115+20331707..20335380AS2, putative, expressed
LOC_Os05g34450Os.35524.1.S3_at1/115+20331707..20335380AS2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27157.1.S1_at--366--8471Chr05:20301542..20301566 (25 bp)
TGGCGACGGCGTTCTGCGAGCGGAG
LOC_Os05g34390
OsAffx.27157.1.S1_at--416--3271NONE
CAACTTTGGCTACGCACGGCTGATG
NONE
OsAffx.27157.1.S1_at--1097--10231NONE
TTTGGCTACGCACGGCTGATGCCGT
NONE
OsAffx.27157.1.S1_at--307--3871Chr05:20302415..20302439 (25 bp)
CTGATGCCGTTGAGGATACGATCAC
LOC_Os05g34390
OsAffx.27157.1.S1_at--683--10751Chr05:20302424..20302448 (25 bp)
TTGAGGATACGATCACGGCGAGCCG
LOC_Os05g34390
OsAffx.27157.1.S1_at--245--3931Chr05:20302447..20302471 (25 bp)
CGGCCGCTATCAGGCAACCAGAAGT
LOC_Os05g34390
OsAffx.27157.1.S1_at--1150--8211Chr05:20302459..20302483 (25 bp)
GGCAACCAGAAGTTGGTATCTCGGG
LOC_Os05g34390
OsAffx.27157.1.S1_at--602--2431Chr05:20302487..20302511 (25 bp)
AAAAGTTCGCGCTAGGATTCTTCCG
LOC_Os05g34390
OsAffx.27157.1.S1_at--16--4591Chr05:20302495..20302516 (22 bp)
GCGCTAGGATTCTTCCGGTCAGTGA
LOC_Os05g34390
OsAffx.27157.1.S1_at--312--1011Chr05:20302500..20302794 (25 bp)
AGGATTCTTCCGGTCAGTGAGAGAA
LOC_Os05g34390
OsAffx.27157.1.S1_at--1029--8092Chr05:20302815..20302839 (25 bp)
GGACCATATATTAATCATCGAAGAG
LOC_Os05g34390
Target Sequence 
TGGCGACGGCGTTCTGCGAGCGGAGGGCCGGCTCGTCGTCGCTGTCGCCGCCCCGCTCCAGATCCCGGAGGGTCGAGGGG
AAGACGAAGGGCGGCGCCATCTCGTCGCGGCCTCGGCGGAGTCGCGACGGCAGCAGGACGACGGCGGCGGCACTGGGTGG
ATGGGGTGGCGGGCAGGGAGGAAGCCGAGACGGGATGGGGAAAGGGGGAGAGAGAGAGGAGAGAGGGGGTGGGACCCACA
CCAGATGGCCAGCCGTCCTGGCTGGCCAACTTTGGCTACGCACGGCTGATGCCGTTGAGGATACGATCACGGCGAGCCGG
CCGCTATCAGGCAACCAGAAGTTGGTATCTCGGGGTGAAAAGTTCGCGCTAGGATTCTTCCGGTCAGTGAGAGAAGAAAA
TAAGGAAGAAAATTTGGACCATATATTAATCATCGAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis