Browse Element(s) Details


OsAffx.27171.1.S1_at

Description tigr:9633.m03250
TID=OsAffx.27171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3500011/11hypothetical protein
LOC_Os08g330202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34960NANA5+20682980..20686125hypothetical protein
LOC_Os05g34970NANA5+20690333..20691413hypothetical protein
LOC_Os05g34980Os.11846.1.S1_at11/115+20695884..20698097amino acid carrier, putative, expressed
LOC_Os05g34990OsAffx.27170.1.S1_at11/115+20704991..20705565hypothetical protein
LOC_Os05g35000OsAffx.27171.1.S1_at11/115+20707159..20708951hypothetical protein
LOC_Os05g35000OsAffx.17306.1.S1_x_at1/115+20707159..20708951hypothetical protein
LOC_Os05g35010Os.50386.1.S1_at11/115+20709347..20711181Cytochrome P450 family protein, expressed
LOC_Os05g35020OsAffx.27172.1.S1_at11/115+20713010..20713960hypothetical protein
LOC_Os05g35030OsAffx.14966.1.S1_at11/115+20716638..20717135hypothetical protein
LOC_Os05g35030OsAffx.22005.1.S1_x_at1/115+20716638..20717135hypothetical protein
LOC_Os05g35040OsAffx.14967.1.S1_at11/115+20719279..20719603hypothetical protein
LOC_Os05g35050Os.31094.1.S1_at9/115+20720832..20721704Ctr copper transporter family protein, expressed
LOC_Os05g35060Os.50400.1.S1_at11/115+20723871..20728032Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g35070OsAffx.14968.1.S1_at11/115+20733836..20737594hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27171.1.S1_at--371--9371Chr05:20708721..20708745 (25 bp)
TCGACGGTATCCTCTCCCGCCAGTG
LOC_Os05g35000
OsAffx.27171.1.S1_at--149--4412Chr08:20349858..20349882 (25 bp)
GCCACTACGACGAGCATCTCGAGAA
LOC_Os08g33020
OsAffx.27171.1.S1_at--234--2032Chr08:20349855..20349879 (25 bp)
ACTACGACGAGCATCTCGAGAACAA
LOC_Os08g33020
OsAffx.27171.1.S1_at--806--1851Chr05:20708159..20708179 (21 bp)
ACGACGCCCTCGCCGATCAGGACTG
LOC_Os05g35000
OsAffx.27171.1.S1_at--657--3251Chr05:20707231..20707255 (25 bp)
CAACCTGGGCCTCAGTGACACTGAC
LOC_Os05g35000
OsAffx.27171.1.S1_at--389--2631Chr05:20707230..20707254 (25 bp)
AACCTGGGCCTCAGTGACACTGACC
LOC_Os05g35000
OsAffx.27171.1.S1_at--717--8651Chr05:20707226..20707250 (25 bp)
TGGGCCTCAGTGACACTGACCGCGT
LOC_Os05g35000
OsAffx.27171.1.S1_at--375--8431Chr05:20707224..20707248 (25 bp)
GGCCTCAGTGACACTGACCGCGTTA
LOC_Os05g35000
OsAffx.27171.1.S1_at--53--9651Chr05:20707220..20707244 (25 bp)
TCAGTGACACTGACCGCGTTAGGGA
LOC_Os05g35000
OsAffx.27171.1.S1_at--1100--3451Chr05:20707219..20707243 (25 bp)
CAGTGACACTGACCGCGTTAGGGAC
LOC_Os05g35000
OsAffx.27171.1.S1_at--488--8731Chr05:20707216..20707240 (25 bp)
TGACACTGACCGCGTTAGGGACGCC
LOC_Os05g35000
Target Sequence 
TCGACGGTATCCTCTCCCGCCAGTGCCGCCATGCGCCGCTCCCTCTCCGTCGCGTCTGAGAGAGAGGAGAGGGGAGAGAA
TGCAGTCCGGTGGCCGGCGGCCATCGACAGGGGCTCGCCACTACGACGAGCATCTCGAGAACAAGTTCTACGCCTCCGAC
CTCGCCAAGAACCTCCAGCTGAACAAGGACGACGACTACGACGCCCTCGCCGATCAGGACTGGGAGGCCACCTACTTCGT
CCAGCACCGCCCCAAGAACAACGCCGCCGACTTCCCGGACATCCCGCCGGCGGCGAGGGAGTCCCTGGACACGTACATCG
CGCAGGCGGTCTCCCTCGCCGAGTTGCGGGCCGGCTGCATCAGCACCAACCTGGGCCTCAGTGACACTGACCGCGTTAGG
GACGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis