Browse Element(s) Details


OsAffx.27176.1.S1_s_at

Description tigr:9633.m03287
TID=OsAffx.27176.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DnaJ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3534011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35290Os.52536.1.S1_at1/115+20870237..20872718Phenylalanine ammonia-lyase, putative, expressed
LOC_Os05g35300OsAffx.15227.1.S1_s_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.3.S1_at11/115+20878133..20880098hypothetical protein
LOC_Os05g35300OsAffx.15227.2.S1_x_at2/115+20878133..20880098hypothetical protein
LOC_Os05g35310OsAffx.14972.1.S1_at11/115+20883436..20886187hypothetical protein
LOC_Os05g35320OsAffx.30475.5.S1_x_at9/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35320OsAffx.30475.1.S1_s_at2/115+20887990..20889686ATP synthase beta chain, putative
LOC_Os05g35330OsAffx.26050.37.S1_s_at11/115+20890698..20891144Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os05g35340OsAffx.27176.1.S1_s_at11/115+20895356..20896726expressed protein
LOC_Os05g35340Os.7559.1.S1_at11/115+20895356..20896726expressed protein
LOC_Os05g35350OsAffx.4525.1.S1_at11/115+20902626..20903091hypothetical protein
LOC_Os05g35360OsAffx.4526.1.S1_at11/115+20906344..20915118Glycosyl hydrolases family 35 protein, expressed
LOC_Os05g35370OsAffx.14973.1.S1_at10/115+20915376..20918109hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27176.1.S1_s_at--324--1891Chr05:20895986..20896010 (25 bp)
ACGATCAGGGTGAAGCCGGGTTGGA
LOC_Os05g35340
OsAffx.27176.1.S1_s_at--548--5811Chr05:20895899..20895923 (25 bp)
GACGCCGTGTTCACCATCTCGGAGA
LOC_Os05g35340
OsAffx.27176.1.S1_s_at--141--4251Chr05:20895895..20895919 (25 bp)
CCGTGTTCACCATCTCGGAGAGGAA
LOC_Os05g35340
OsAffx.27176.1.S1_s_at--1083--9491Chr05:20895883..20895907 (25 bp)
TCTCGGAGAGGAAGCACAAGGTGTT
LOC_Os05g35340
OsAffx.27176.1.S1_s_at--637--7171Chr05:20895863..20895887 (25 bp)
GTGTTCAAGAGGAAAGGCAACGACC
LOC_Os05g35340
OsAffx.27176.1.S1_s_at--1011--8271Chr05:20895797..20895821 (25 bp)
GGCTGGTCCTTCTCCTTCCGGCTGA
LOC_Os05g35340
OsAffx.27176.1.S1_s_at--830--9491Chr05:20895787..20895811 (25 bp)
TCTCCTTCCGGCTGATCGGCGGCGA
LOC_Os05g35340
OsAffx.27176.1.S1_s_at--772--1451Chr05:20895763..20895787 (25 bp)
AGAAGATGAGCTTCACGTTCCGCGA
LOC_Os05g35340
OsAffx.27176.1.S1_s_at--608--691Chr05:20895758..20895782 (25 bp)
ATGAGCTTCACGTTCCGCGACGAGG
LOC_Os05g35340
OsAffx.27176.1.S1_s_at--829--3471Chr05:20895732..20895756 (25 bp)
CATCTCCCCCGGGTACGAGAAGGTG
LOC_Os05g35340
OsAffx.27176.1.S1_s_at--742--4591Chr05:20895640..20895664 (25 bp)
GCGACCTCCGGGTGAAGTTCGACGT
LOC_Os05g35340
Target Sequence 
ACGATCAGGGTGAAGCCGGGTTGGAAGAAGGGGATGAAGGTGACGTTCGAGGGGATGGGCGACGAGCGGCCGGGCTGCCT
CCCAGGCGACGCCGTGTTCACCATCTCGGAGAGGAAGCACAAGGTGTTCAAGAGGAAAGGCAACGACCTGGTGCTCAAGG
CCGAGGTGCCGCTGGTGAGCGCGCTCACCGGCTGGTCCTTCTCCTTCCGGCTGATCGGCGGCGAGAAGATGAGCTTCACG
TTCCGCGACGAGGTCATCTCCCCCGGGTACGAGAAGGTGGTCGCCGGCGAGGGCATGCCCGTCGTCGCCGCCGGCGGCGG
CGGCGAGAAGGCCGCCGCCGCGCGCGGCGACCTCCGGGTGAAGTTCGACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27176.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis