Browse Element(s) Details


OsAffx.27180.1.S1_x_at

Description tigr:9633.m03318
TID=OsAffx.27180.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3562011/11hypothetical protein
LOC_Os01g159901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35570Os.23672.1.S1_at11/115+21052072..21055429Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os05g35580Os.11493.1.A1_at11/115+21058192..21060267Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os05g35594OsAffx.4531.1.S1_s_at11/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594Os.52604.1.A1_at10/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594OsAffx.22811.1.S1_at3/115+21061148..21065177POT family protein, expressed
LOC_Os05g35594OsAffx.22005.1.S1_x_at1/115+21061148..21065177POT family protein, expressed
LOC_Os05g35610NANA5+21075248..21076065hypothetical protein
LOC_Os05g35620OsAffx.27180.1.S1_x_at11/115+21078150..21078560hypothetical protein
LOC_Os05g35620OsAffx.27180.1.S1_at11/115+21078150..21078560hypothetical protein
LOC_Os05g35630OsAffx.4532.1.S1_at11/115+21083529..21083978hypothetical protein
LOC_Os05g35650Os.53707.1.S1_x_at1/115+21088676..21103104POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27180.1.S1_x_at--637--3911Chr05:21078263..21078287 (25 bp)
CTGGAGCTGGAGTGCAACGCAGTTT
LOC_Os05g35620
OsAffx.27180.1.S1_x_at--628--5891Chr05:21078266..21078290 (25 bp)
GAGCTGGAGTGCAACGCAGTTTGTC
LOC_Os05g35620
OsAffx.27180.1.S1_x_at--697--4711Chr05:21078268..21078292 (25 bp)
GCTGGAGTGCAACGCAGTTTGTCCC
LOC_Os05g35620
OsAffx.27180.1.S1_x_at--589--8551Chr05:21078270..21078294 (25 bp)
TGGAGTGCAACGCAGTTTGTCCCTG
LOC_Os05g35620
OsAffx.27180.1.S1_x_at--565--8031Chr05:21078271..21078295 (25 bp)
GGAGTGCAACGCAGTTTGTCCCTGC
LOC_Os05g35620
OsAffx.27180.1.S1_x_at--1117--1111Chr05:21078273..21078297 (25 bp)
AGTGCAACGCAGTTTGTCCCTGCCT
LOC_Os05g35620
OsAffx.27180.1.S1_x_at--91--7091Chr05:21078399..21078423 (25 bp)
GTCAACGACACGCAGGACGACGTCG
LOC_Os05g35620
OsAffx.27180.1.S1_x_at--809--1852Chr05:21078415..21078439 (25 bp)
ACGACGTCGTCAAGAAGGAGTGTGA
LOC_Os05g35620
OsAffx.27180.1.S1_x_at--59--991Chr05:21078430..21078454 (25 bp)
AGGAGTGTGACAAGAGGCAGCCGCG
LOC_Os05g35620
OsAffx.27180.1.S1_x_at--703--1831Chr05:21078472..21078496 (25 bp)
ACGCGGCTAGCCAGAACGGGCGCAC
LOC_Os05g35620
OsAffx.27180.1.S1_x_at--1096--3931Chr05:21078475..21078499 (25 bp)
CGGCTAGCCAGAACGGGCGCACCGT
LOC_Os05g35620
Target Sequence 
CTGGAGCTGGAGTGCAACGCAGTTTGTCCCTGCCTCCTGCCGCTCTAGCTCCCAGCGCCGACGCCGACACGGTCCTCCCG
CCTCGCCACCACCGCCAAGCCGACGCCAACGCTGGGGAGAGGGAGGAGGCGGCGCCGTCAACGACACGCAGGACGACGTC
GTCAAGAAGGAGTGTGACAAGAGGCAGCCGCGGCAGGAGATGGCCGTGGACGCGGCTAGCCAGAACGGGCGCACCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27180.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis