Browse Element(s) Details


OsAffx.27220.1.S1_at

Description tigr:9633.m03551
TID=OsAffx.27220.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ubiquitin family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3831011/11Ubiquitin, putative
LOC_Os10g308701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38260NANA5+22347220..22351989retrotransposon protein, putative, unclassified
LOC_Os05g38270Os.7366.1.S1_at11/115+22357378..22362146Regulator of chromosome condensation, putative, expressed
LOC_Os05g38280Os.57128.1.S1_at11/115+22364965..22366981expressed protein
LOC_Os05g38280Os.57128.1.S1_x_at11/115+22364965..22366981expressed protein
LOC_Os05g38290OsAffx.27219.1.S1_at11/115+22367506..22369217Protein phosphatase 2C, putative, expressed
LOC_Os05g38290OsAffx.19050.1.S1_at1/115+22367506..22369217Protein phosphatase 2C, putative, expressed
LOC_Os05g38300OsAffx.15008.1.S1_at11/115+22370214..22370564hypothetical protein
LOC_Os05g38310OsAffx.27220.1.S1_at11/115+22372384..22374158Ubiquitin, putative
LOC_Os05g38320NANA5+22381371..22382861expressed protein
LOC_Os05g38330Os.5627.1.S1_at11/115+22384763..22388887expressed protein
LOC_Os05g38340NANA5+22390719..22391794retrotransposon protein, putative, LINE subclass
LOC_Os05g38350OsAffx.27222.1.S1_x_at11/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38350OsAffx.27222.1.S1_at11/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38350Os.33373.1.S2_x_at1/115+22398553..22401036Acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0009733biological_processresponse to auxin stimulus
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0045116biological_processprotein neddylation
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27220.1.S1_at--1081--1712Chr10:15768703..15769127 (25 bp)
ACCACCACCAGTCGATCGAGGAGGC
LOC_Os10g30870
OsAffx.27220.1.S1_at--859--9371Chr05:22374087..22374111 (25 bp)
TCGAGGAGGCGAGAGGCAAGATGCA
LOC_Os05g38310
OsAffx.27220.1.S1_at--384--651Chr05:22374067..22374091 (25 bp)
ATGCAGATCTTCGTGTGATCACCCT
LOC_Os05g38310
OsAffx.27220.1.S1_at--443--9051Chr05:22374066..22374090 (25 bp)
TGCAGATCTTCGTGTGATCACCCTG
LOC_Os05g38310
OsAffx.27220.1.S1_at--768--3431Chr05:22374064..22374088 (25 bp)
CAGATCTTCGTGTGATCACCCTGGA
LOC_Os05g38310
OsAffx.27220.1.S1_at--1124--1271Chr05:22374063..22374087 (25 bp)
AGATCTTCGTGTGATCACCCTGGAG
LOC_Os05g38310
OsAffx.27220.1.S1_at--757--411Chr05:22374061..22374085 (25 bp)
ATCTTCGTGTGATCACCCTGGAGGT
LOC_Os05g38310
OsAffx.27220.1.S1_at--840--9571Chr05:22374060..22374084 (25 bp)
TCTTCGTGTGATCACCCTGGAGGTC
LOC_Os05g38310
OsAffx.27220.1.S1_at--623--10611Chr05:22374058..22374082 (25 bp)
TTCGTGTGATCACCCTGGAGGTCGA
LOC_Os05g38310
OsAffx.27220.1.S1_at--275--7471Chr05:22374055..22374079 (25 bp)
GTGTGATCACCCTGGAGGTCGAGAG
LOC_Os05g38310
OsAffx.27220.1.S1_at--236--5391Chr05:22372770..22372794 (25 bp)
GAAGCAGCTGGAAGACGGCTGCACG
LOC_Os05g38310
Target Sequence 
ACCACCACCAGTCGATCGAGGAGGCGAGAGGCAAGATGCAGATCTTCGTGTGATCACCCTGGAGGTCGAGAGCAGCGACA
CCATAGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCGCCGGATCAGCAGCGGCTCATCTTCGCGGGGAAG
CAGCTGGAAGACGGCTGCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis