Browse Element(s) Details


OsAffx.27223.1.S1_at

Description tigr:9633.m03560
TID=OsAffx.27223.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Multicopper oxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3839011/11laccase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38350OsAffx.27222.1.S1_x_at11/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38350OsAffx.27222.1.S1_at11/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38350Os.33373.1.S2_x_at1/115+22398553..22401036Acyltransferase family protein, expressed
LOC_Os05g38360Os.25051.1.S1_at11/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38360Os.25051.2.S1_x_at10/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38360OsAffx.4553.1.S1_at10/115+22405348..22408995DHHC zinc finger domain containing protein, expressed
LOC_Os05g38370Os.11124.1.S1_at9/115+22409288..22411806FK506-binding protein 4, putative, expressed
LOC_Os05g38380NANA5+22413448..22413702hypothetical protein
LOC_Os05g38390OsAffx.27223.1.S1_at11/115+22418169..22419975laccase, putative
LOC_Os05g38400Os.7204.1.S1_at11/115+22435132..22440963AFG3-like protein 2, putative, expressed
LOC_Os05g38410NANA5+22443546..22445494laccase LAC5-6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27223.1.S1_at--451--3911Chr05:22418717..22418741 (25 bp)
CGGACGGTGGACAGGCACTTCTTCT
LOC_Os05g38390
OsAffx.27223.1.S1_at--164--2471Chr05:22418630..22418654 (25 bp)
AACAACACCAGGTTCGCGGCGTCCA
LOC_Os05g38390
OsAffx.27223.1.S1_at--162--2471Chr05:22418603..22418627 (25 bp)
AACAACGTGTCGTTCGTGATGCCCA
LOC_Os05g38390
OsAffx.27223.1.S1_at--492--6711Chr05:22418592..22418616 (25 bp)
GTTCGTGATGCCCAGGACGTCGCTC
LOC_Os05g38390
OsAffx.27223.1.S1_at--548--891Chr05:22418563..22418587 (25 bp)
AGGCGCACTACCAGCGGCGGTACAA
LOC_Os05g38390
OsAffx.27223.1.S1_at--619--1711Chr05:22418554..22418578 (25 bp)
ACCAGCGGCGGTACAACGGTGTGCT
LOC_Os05g38390
OsAffx.27223.1.S1_at--480--5511Chr05:22418472..22418496 (25 bp)
GAACAACACGTTCGTGACCCACGGC
LOC_Os05g38390
OsAffx.27223.1.S1_at--333--8611Chr05:22418440..22418464 (25 bp)
TGGTGCCGCTCAGTTTCAACACAAC
LOC_Os05g38390
OsAffx.27223.1.S1_at--603--6811Chr05:22418428..22418452 (25 bp)
GTTTCAACACAACCGTGGAGGTGGT
LOC_Os05g38390
OsAffx.27223.1.S1_at--614--2531Chr05:22418315..22418339 (25 bp)
AACTACGACGCCAGCAATGACACCG
LOC_Os05g38390
OsAffx.27223.1.S1_at--1002--7331Chr05:22418267..22418291 (25 bp)
GTGCAGCGGAACACCATCAGCGTGC
LOC_Os05g38390
Target Sequence 
CGGACGGTGGACAGGCACTTCTTCTTCGCCGTCGGGCTCGGCGCCGACCCGTGCCAGAGCCCGGTGAACGGGACGTGCCA
GGGGCCCAACAACACCAGGTTCGCGGCGTCCATGAACAACGTGTCGTTCGTGATGCCCAGGACGTCGCTCCTCCAGGCGC
ACTACCAGCGGCGGTACAACGGTGTGCTCGCGGCCAACTTCCCGGCGGCGCCGCGGACGCCGTTCAACTACACCGGCACG
CCGCCGAACAACACGTTCGTGACCCACGGCACCAGGGTGGTGCCGCTCAGTTTCAACACAACCGTGGAGGTGGTGCTGCA
GGACACCAGCATCCTCGGCGCCGAGAGCCACCCGCTGCACCTGCACGGCTACGACTTCTACGTCGTCGGCACCGGGTTCG
GCAACTACGACGCCAGCAATGACACCGCCAAGTACAACCTCGTCGACCCCGTGCAGCGGAACACCATCAGCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis