Browse Element(s) Details


OsAffx.27234.1.S1_at

Description tigr:9633.m03643
TID=OsAffx.27234.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3917011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39130OsAffx.25007.2.S1_at1/115+22862782..22869989retrotransposon protein, putative, unclassified
LOC_Os05g39140Os.12242.1.S1_at11/115+22872129..22877626expressed protein
LOC_Os05g39140Os.48582.1.A1_s_at10/115+22872129..22877626expressed protein
LOC_Os05g39150Os.51909.1.S1_at11/115+22878075..22881251expressed protein
LOC_Os05g39160OsAffx.27234.2.S1_at11/115+22882724..22883992hypothetical protein
LOC_Os05g39170OsAffx.27234.1.S1_at11/115+22887046..22888595hypothetical protein
LOC_Os05g39180Os.50520.1.S1_at11/115+22891311..22894850expressed protein
LOC_Os05g39190Os.54521.1.S1_at11/115+22895418..22898968expressed protein
LOC_Os05g39200OsAffx.15023.1.S1_at10/115+22900867..22903188hypothetical protein
LOC_Os05g39210Os.56330.1.S1_at11/115+22905044..22908281expressed protein
LOC_Os05g39220Os.52081.1.S1_at10/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g39220OsAffx.23696.1.S1_x_at1/115+22909339..22911266GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27234.1.S1_at--651--5771Chr05:22887678..22887702 (25 bp)
GACGATGAGCTTGTCCTCGCTGTCG
LOC_Os05g39170
OsAffx.27234.1.S1_at--729--691Chr05:22887682..22887706 (25 bp)
ATGAGCTTGTCCTCGCTGTCGTTCA
LOC_Os05g39170
OsAffx.27234.1.S1_at--955--9391Chr05:22887700..22887724 (25 bp)
TCGTTCACGCGCCAGATTCTCATCG
LOC_Os05g39170
OsAffx.27234.1.S1_at--1071--4411Chr05:22887710..22887734 (25 bp)
GCCAGATTCTCATCGACCAGCCGGT
LOC_Os05g39170
OsAffx.27234.1.S1_at--1081--9371Chr05:22887947..22887971 (25 bp)
TCGAGGTGTCCGGTGCCAAGCCGTT
LOC_Os05g39170
OsAffx.27234.1.S1_at--32--2611Chr05:22888093..22888117 (25 bp)
AACGCCAGCGTCGTGTACCTCGTGG
LOC_Os05g39170
OsAffx.27234.1.S1_at--599--4351Chr05:22888097..22888121 (25 bp)
CCAGCGTCGTGTACCTCGTGGTTGG
LOC_Os05g39170
OsAffx.27234.1.S1_at--112--9371Chr05:22888151..22888175 (25 bp)
TCGACATGGAAAGGCGCATGGTGAT
LOC_Os05g39170
OsAffx.27234.1.S1_at--315--3511Chr05:22888167..22888191 (25 bp)
CATGGTGATTGCGAGTTTTCTGCTC
LOC_Os05g39170
OsAffx.27234.1.S1_at--882--31Chr05:22888174..22888198 (25 bp)
ATTGCGAGTTTTCTGCTCGACGAGC
LOC_Os05g39170
OsAffx.27234.1.S1_at--310--5871Chr05:22888195..22888219 (25 bp)
GAGCCCACCGTGTTTACGCCTTTCG
LOC_Os05g39170
Target Sequence 
GACGATGAGCTTGTCCTCGCTGTCGTTCACGCGCCAGATTCTCATCGACCAGCCGGTGGTGTCCTTCGGCGGCAGGATGT
GGTGGATCGACCTGGCCTGGGGCGCCGTCTCCGTCGACCCGTTCCCCGACCAGCCGGACGTCCGCTACGTCCTCCTGCCT
AGCGGCAGCGTGCTGCCCGCCGACGCGGCGAGCATCGAGATGCGGCGGGGGAAGGTGGGGCTGAGAAGGTGGCGGCGCAT
CGGGGTCAGCGAAGGGAGGCTGCGGTACGTCGAGGTGTCCGGTGCCAAGCCGTTCGTGCTCAGCTCCTTCGTGCTCGACG
ACGACGGCGGCGGCCGCTGGACGCTGGCGCACCGCGTGGCGCTCGGCCCGCTCTCGCCGGCGGGGCCCTTGCAGATCGGC
GCCATCGATCCGCTCAACGCCAGCGTCGTGTACCTCGTGGTTGGCGGCGACGACGGCAAGCACGTCATCGGCGTCGACAT
GGAAAGGCGCATGGTGATTGCGAGTTTTCTGCTCGACGAGCCCACCGTGTTTACGCCTTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis