Browse Element(s) Details


OsAffx.27234.2.S1_at

Description tigr:9633.m03642
TID=OsAffx.27234.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3916011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39130OsAffx.25007.2.S1_at1/115+22862782..22869989retrotransposon protein, putative, unclassified
LOC_Os05g39140Os.12242.1.S1_at11/115+22872129..22877626expressed protein
LOC_Os05g39140Os.48582.1.A1_s_at10/115+22872129..22877626expressed protein
LOC_Os05g39150Os.51909.1.S1_at11/115+22878075..22881251expressed protein
LOC_Os05g39160OsAffx.27234.2.S1_at11/115+22882724..22883992hypothetical protein
LOC_Os05g39170OsAffx.27234.1.S1_at11/115+22887046..22888595hypothetical protein
LOC_Os05g39180Os.50520.1.S1_at11/115+22891311..22894850expressed protein
LOC_Os05g39190Os.54521.1.S1_at11/115+22895418..22898968expressed protein
LOC_Os05g39200OsAffx.15023.1.S1_at10/115+22900867..22903188hypothetical protein
LOC_Os05g39210Os.56330.1.S1_at11/115+22905044..22908281expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27234.2.S1_at--146--3211Chr05:22883392..22883416 (25 bp)
CAAGGTTATAGTCGACCACCCGGTG
LOC_Os05g39160
OsAffx.27234.2.S1_at--762--7311Chr05:22883528..22883552 (25 bp)
GTGCTGCTCAATCCCGAGGCGACAA
LOC_Os05g39160
OsAffx.27234.2.S1_at--116--5631Chr05:22883548..22883572 (25 bp)
GACAAACCCCGAGTGGCGACACAAG
LOC_Os05g39160
OsAffx.27234.2.S1_at--39--2211Chr05:22883568..22883592 (25 bp)
ACAAGCTGAGGCTGGGCGACTACCG
LOC_Os05g39160
OsAffx.27234.2.S1_at--376--9071Chr05:22883619..22883643 (25 bp)
TGCGTTACACCGAGCTGTCCTGGGA
LOC_Os05g39160
OsAffx.27234.2.S1_at--249--532Chr05:22883721..22883745 (25 bp)
ATCGCGTGGAGCTCAGCCAGATCTG
LOC_Os05g39160
OsAffx.27234.2.S1_at--775--7591Chr05:22883779..22883803 (25 bp)
GGGCACCAAGCCGTGCGTTGGTTTC
LOC_Os05g39160
OsAffx.27234.2.S1_at--778--3971Chr05:22883838..22883862 (25 bp)
CGGTCGGCGATCACGTCATCGGCGT
LOC_Os05g39160
OsAffx.27234.2.S1_at--497--6911Chr05:22883892..22883916 (25 bp)
GTAGTCTAGTGGAAGATCCCTCCGA
LOC_Os05g39160
OsAffx.27234.2.S1_at--861--1091Chr05:22883899..22883923 (25 bp)
AGTGGAAGATCCCTCCGAGCTCATG
LOC_Os05g39160
OsAffx.27234.2.S1_at--896--10611Chr05:22883938..22883962 (25 bp)
TTCGTGGCTTGGGTCATGCCAGATC
LOC_Os05g39160
Target Sequence 
CAAGGTTATAGTCGACCACCCGGTGGTCGCCGCCGGCGGCCGGCTGTGGTGGCTCGACATGACCTGGGGCGCCGTCCACG
TCGACCCGTTCAGCCATGACCCAGACTTCCGCTTCCTCGAGCTGCCGATCGGCAGCGTGCTGCTCAATCCCGAGGCGACA
AACCCCGAGTGGCGACACAAGCTGAGGCTGGGCGACTACCGGAGAATGGGGGTCAGTGAGGGGCGGCTGCGTTACACCGA
GCTGTCCTGGGACGAGCCGTTCGTGCTCAGCTCCTTCGCGCTCGACGGTGACACCGTCGAGGGCAGCGGCTGGAAGTGGA
CGCTGGAGCATCGCGTGGAGCTCAGCCAGATCTGGGGCGACGGAGGCTACCCGTGGCTGCCATTCCGGGGCACCAAGCCG
TGCGTTGGTTTCCTCGACCCGCTGAACGCCCATGTCGCCTATCCCACGGTCGGCGATCACGTCATCGGCGTCGACATGGA
GAGAGGGGTGGTGATTGGGAGTAGTCTAGTGGAAGATCCCTCCGAGCTCATGCCTTGCGTTCTCCCTTCGTGGCTTGGGT
CATGCCAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27234.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis