Browse Element(s) Details


OsAffx.27250.4.S1_x_at

Description tigr:9630.m05009
TID=OsAffx.27250.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5105011/11hypothetical protein
LOC_Os05g072501/11Mitochondrial import inner membrane translocase subunit Tim17 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51020Os.32449.1.S1_at11/112+31196330..31197816expressed protein
LOC_Os02g51030Os.24760.1.A1_at6/112+31204346..31206791methyltransferase, UbiE/COQ5 family protein, expressed
LOC_Os02g51040Os.4613.1.S1_at11/112+31214699..31216344Alpha-expansin 15 precursor, putative, expressed
LOC_Os02g51050OsAffx.27250.4.S1_x_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51050OsAffx.27250.4.S1_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51050OsAffx.27250.4.S1_s_at11/112+31220692..31221487hypothetical protein
LOC_Os02g51060Os.6170.1.S1_at11/112+31222529..31226031glycosyl transferase, group 2 family protein, expressed
LOC_Os02g51070Os.13018.1.S1_a_at11/112+31227021..31232099Soluble starch synthase 2-2, chloroplast precursor, putative, expressed
LOC_Os02g51070Os.18301.1.S1_at9/112+31227021..31232099Soluble starch synthase 2-2, chloroplast precursor, putative, expressed
LOC_Os02g51080Os.10275.1.S1_at11/112+31240356..31242932Geranylgeranyl hydrogenase, putative, expressed
LOC_Os02g51090OsAffx.12583.1.S1_at11/112+31243291..31244739RWP-RK domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0045039biological_processprotein import into mitochondrial inner membrane
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27250.4.S1_x_at--266--4131Chr02:31220865..31220889 (25 bp)
CGCAGACGTTGGTGGGCACAAGACT
LOC_Os02g51050
OsAffx.27250.4.S1_x_at--138--1891Chr02:31220870..31220894 (25 bp)
ACGTTGGTGGGCACAAGACTAGCGT
LOC_Os02g51050
OsAffx.27250.4.S1_x_at--253--8651Chr02:31220877..31220901 (25 bp)
TGGGCACAAGACTAGCGTCGGCGTC
LOC_Os02g51050
OsAffx.27250.4.S1_x_at--683--8231Chr02:31220879..31220903 (25 bp)
GGCACAAGACTAGCGTCGGCGTCAG
LOC_Os02g51050
OsAffx.27250.4.S1_x_at--915--2211Chr02:31220882..31220906 (25 bp)
ACAAGACTAGCGTCGGCGTCAGCCT
LOC_Os02g51050
OsAffx.27250.4.S1_x_at--341--7692Chr02:31220930..31220954 (25 bp)
GGGTCAAGGCCGTAGTCTGTCTCCG
LOC_Os02g51050
OsAffx.27250.4.S1_x_at--715--732Chr05:3815446..3815470 (25 bp)
ATGTTCGTGTGGCTCAAACCTCAAA
LOC_Os05g07250
OsAffx.27250.4.S1_x_at--765--9411Chr02:31221147..31221171 (25 bp)
TCGTGCCGAACGGATGTCGTCCAGC
LOC_Os02g51050
OsAffx.27250.4.S1_x_at--852--8971Chr02:31221201..31221225 (25 bp)
TGAACGACGACGTACTTGCGCTGGT
LOC_Os02g51050
OsAffx.27250.4.S1_x_at--191--4271Chr02:31221300..31221324 (25 bp)
CCTGGCCCAGGGTGTCATGCGACGC
LOC_Os02g51050
OsAffx.27250.4.S1_x_at--373--1051Chr02:31221308..31221332 (25 bp)
AGGGTGTCATGCGACGCGCGGACGG
LOC_Os02g51050
Target Sequence 
CGCAGACGTTGGTGGGCACAAGACTAGCGTCGGCGTCAGCCTGCATCACCTCGAGCAGCTTCGCCGGGTCAAGGCCGTAG
TCTGTCTCCGCTCCAGTGGGATCGACTGGATGTTGGCTGGATCGAATATAACATGTTCGTGTGGCTCAAACCTCAAAGAG
CATTTTACGAAGCTGCTCGAGGTGATGCAGGCTGAAGCCGACGCCGGTCTCGTGCCGAACGGATGTCGTCCAGCCGTCGC
CATCCTCGCCGCAGCGGACGCCGTGAACGACGACGTACTTGCGCTGGTGGTCTTCAAGTCGGGGGTGTCCGACCCGGGGG
GCCTATTGGCGCCGTGGTCGGAGGATGCCGACCGCGCCTGCGCCTGGCCCAGGGTGTCATGCGACGCGCGGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27250.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis