Browse Element(s) Details


OsAffx.27256.1.S1_s_at

Description tigr:9633.m03760
TID=OsAffx.27256.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=KH domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4648011/11Beige/BEACH domain containing protein, expressed
LOC_Os12g052004/11DNA-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46440OsAffx.15954.1.S1_at11/116+28188529..28189857expressed protein
LOC_Os06g46450Os.21295.1.S1_at11/116+28189959..28195207Polyprenyl synthetase family protein, expressed
LOC_Os06g46460OsAffx.28133.1.S1_at11/116+28202819..28203372expressed protein
LOC_Os06g46470NANA6+28204290..28204619expressed protein
LOC_Os06g46480Os.55138.1.S1_x_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480OsAffx.27256.1.S1_s_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46480Os.53992.1.S1_at11/116+28209039..28227107Beige/BEACH domain containing protein, expressed
LOC_Os06g46490Os.56318.1.S1_at7/116+28228547..28232906expressed protein
LOC_Os06g46500Os.49496.1.S1_at11/116+28233462..28237337L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os06g46510OsAffx.31069.2.S1_x_at1/116+28242179..28244795hypothetical protein
LOC_Os06g46510Os.25754.2.S1_x_at1/116+28242179..28244795hypothetical protein
LOC_Os06g46520OsAffx.20387.1.S1_x_at2/116+28246043..28248619retrotransposon protein, putative, unclassified
LOC_Os06g46530NANA6+28248872..28251446retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0000166molecular_functionnucleotide binding
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27256.1.S1_s_at--839--2592Chr06:28226769..28226793 (25 bp)
AACGCCAGCCGCACGGAGTTTGGCT
LOC_Os06g46480
OsAffx.27256.1.S1_s_at--1078--8433Chr12:2304799..2304823 (25 bp)
GGCCATGGCGAGCATGCTGGGTTGA
LOC_Os12g05200
OsAffx.27256.1.S1_s_at--861--1533Chr12:2304809..2304863 (25 bp)
AGCATGCTGGGTTGAGCTCCGGGCG
LOC_Os12g05200
OsAffx.27256.1.S1_s_at--385--4353Chr12:2304867..2304891 (25 bp)
CCAGATCCTTGCCAATCTAGGTCAG
LOC_Os12g05200
OsAffx.27256.1.S1_s_at--361--1293Chr12:2304869..2304893 (25 bp)
AGATCCTTGCCAATCTAGGTCAGTA
LOC_Os12g05200
OsAffx.27256.1.S1_s_at--701--3912Chr06:28226566..28226590 (25 bp)
CGGCCTTCCACTCGAAGAGCTAGGG
LOC_Os06g46480
OsAffx.27256.1.S1_s_at--1141--10652Chr06:28226561..28226585 (25 bp)
TTCCACTCGAAGAGCTAGGGCTTGA
LOC_Os06g46480
OsAffx.27256.1.S1_s_at--1113--1552Chr06:28226549..28226573 (25 bp)
AGCTAGGGCTTGACGGTGCTGTACT
LOC_Os06g46480
OsAffx.27256.1.S1_s_at--1096--1072Chr06:28226545..28226569 (25 bp)
AGGGCTTGACGGTGCTGTACTCGAC
LOC_Os06g46480
OsAffx.27256.1.S1_s_at--871--10752Chr06:28226540..28226564 (25 bp)
TTGACGGTGCTGTACTCGACGCGCT
LOC_Os06g46480
OsAffx.27256.1.S1_s_at--317--9132Chr06:28226533..28226557 (25 bp)
TGCTGTACTCGACGCGCTCTGGCGA
LOC_Os06g46480
Target Sequence 
AACGCCAGCCGCACGGAGTTTGGCTGCAGGGGACAACGGCATGCAGGTGAGTGGCCATGGCGAGCATGCTGGGTTGAGCT
CCGGGCGGCGTCGTGGCCGGCCAAAAGGGTCCAGGCGGCGCCAGATCCTTGCCAATCTAGGTCAGTATATTGCCGTCCAC
CCGCGCGCACTCGCCATGGCCAGCGGCAGTGGCACCGGCGCCGGCCTTCCACTCGAAGAGCTAGGGCTTGACGGTGCTGT
ACTCGACGCGCTCTGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27256.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis