Browse Element(s) Details


OsAffx.27260.1.S1_at

Description tigr:9633.m03783
TID=OsAffx.27260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4050011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40440NANA5+23673676..23677720retrotransposon protein, putative, LINE subclass
LOC_Os05g40450OsAffx.4575.1.S1_at11/115+23678583..23679797F-box domain containing protein
LOC_Os05g40460OsAffx.25007.2.S1_s_at10/115+23683289..23685670retrotransposon protein, putative, unclassified
LOC_Os05g40460OsAffx.25007.2.S1_at8/115+23683289..23685670retrotransposon protein, putative, unclassified
LOC_Os05g40460OsAffx.25007.1.S1_at6/115+23683289..23685670retrotransposon protein, putative, unclassified
LOC_Os05g40470NANA5+23686036..23687729retrotransposon protein, putative, unclassified
LOC_Os05g40480NANA5+23688447..23691779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g40490NANA5+23694944..23698700Zinc knuckle family protein
LOC_Os05g40500OsAffx.27260.1.S1_at11/115+23700581..23704719F-box domain containing protein
LOC_Os05g40500OsAffx.27260.3.S1_x_at1/115+23700581..23704719F-box domain containing protein
LOC_Os05g40500Os.51294.1.S1_at1/115+23700581..23704719F-box domain containing protein
LOC_Os05g40500OsAffx.27260.2.S1_x_at1/115+23700581..23704719F-box domain containing protein
LOC_Os05g40510OsAffx.27260.4.S1_x_at11/115+23705605..23706798hypothetical protein
LOC_Os05g40510OsAffx.27260.2.S1_x_at1/115+23705605..23706798hypothetical protein
LOC_Os05g40520OsAffx.15041.1.S1_at11/115+23709773..23710984F-box domain containing protein
LOC_Os05g40530OsAffx.15042.1.S1_at11/115+23713390..23713995hypothetical protein
LOC_Os05g40540OsAffx.27261.1.S1_at9/115+23715196..23717082hypothetical protein
LOC_Os05g40540Os.5060.1.S1_at3/115+23715196..23717082hypothetical protein
LOC_Os05g40550Os.54817.1.S1_at11/115+23718193..23719943expressed protein
LOC_Os05g40560OsAffx.4577.1.S1_at11/115+23720115..23720668hypothetical protein
LOC_Os05g40570OsAffx.27260.5.S1_at11/115+23722920..23724107hypothetical protein
LOC_Os05g40570OsAffx.27260.3.S1_x_at1/115+23722920..23724107hypothetical protein
LOC_Os05g40570OsAffx.27260.2.S1_x_at1/115+23722920..23724107hypothetical protein
LOC_Os05g40580OsAffx.27260.2.S1_x_at1/115+23725676..23726842hypothetical protein
LOC_Os05g40590OsAffx.27260.2.S1_x_at11/115+23728221..23729796hypothetical protein
LOC_Os05g40590OsAffx.27260.2.S1_at10/115+23728221..23729796hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27260.1.S1_at--692--871Chr05:23701157..23701181 (25 bp)
AGGCCTCCTCGTGTTTCGAGTATCC
LOC_Os05g40500
OsAffx.27260.1.S1_at--740--7391Chr05:23701147..23701171 (25 bp)
GTGTTTCGAGTATCCGAGTTCCACG
LOC_Os05g40500
OsAffx.27260.1.S1_at--536--1191Chr05:23701139..23701163 (25 bp)
AGTATCCGAGTTCCACGACTTCAAG
LOC_Os05g40500
OsAffx.27260.1.S1_at--806--971Chr05:23701110..23701134 (25 bp)
AGGAGCTTGACATAGCCCCCATCGA
LOC_Os05g40500
OsAffx.27260.1.S1_at--1076--1851Chr05:23700852..23700876 (25 bp)
ACGACTGGGTGGAGCTGGACTCGCT
LOC_Os05g40500
OsAffx.27260.1.S1_at--1115--1991Chr05:23700834..23700858 (25 bp)
ACTCGCTGGGAGGCCGCATGCTGTT
LOC_Os05g40500
OsAffx.27260.1.S1_at--309--10611Chr05:23700811..23700835 (25 bp)
TTCGTCGCACGAGGCTGCTCGACAT
LOC_Os05g40500
OsAffx.27260.1.S1_at--268--3771Chr05:23700724..23700748 (25 bp)
CTCTACGGCGAGGTGGCAATGTTCA
LOC_Os05g40500
OsAffx.27260.1.S1_at--550--1051Chr05:23700714..23700738 (25 bp)
AGGTGGCAATGTTCAGGGATCCAAA
LOC_Os05g40500
OsAffx.27260.1.S1_at--717--2271Chr05:23700692..23700716 (25 bp)
AAATCTGCGGCAATACCCCTGCAGA
LOC_Os05g40500
OsAffx.27260.1.S1_at--656--891Chr05:23700636..23700660 (25 bp)
AGGCGGTTCCACGCGTGGACAACTT
LOC_Os05g40500
Target Sequence 
AGGCCTCCTCGTGTTTCGAGTATCCGAGTTCCACGACTTCAAGGACGAGGAGCTTGACATAGCCCCCATCGAGATTCGCC
GCTTCCCTCGCCGCGGGCGCGGCCACTACGGCGAGGACGACGTCGCCGTTGTCCGCTACCTGGTGGAGTCCCGCGGGCGC
CTCCTCATGGTGGCCAGGATCGCTGCTGGCGCTGGTCCTCTCCGCCCCTCGCCGCCGTCGCCGACGACGACGTCGGAGTT
CAGGGTGTTCGAGATGGCGAGGCGATCGACGGCATTCGCCGCCACCAACAACGATGGCGCCGAGTACGACTGGGTGGAGC
TGGACTCGCTGGGAGGCCGCATGCTGTTCGTCGCACGAGGCTGCTCGACATCGTACGAGGTGGCGAGGCATCCGGGGTTC
GAGGAGGGCGTCTACTTCCTGGACGACGGGAGGCTCTACGGCGAGGTGGCAATGTTCAGGGATCCAAATCTGCGGCAATA
CCCCTGCAGAGACAGCGGCAGGTGGCTGGCGTCGGCGCCGGAGGCGGTTCCACGCGTGGACAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis