Browse Element(s) Details


OsAffx.27260.4.S1_x_at

Description tigr:9633.m03784
TID=OsAffx.27260.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4051011/11hypothetical protein
LOC_Os05g406101/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40460OsAffx.25007.2.S1_s_at10/115+23683289..23685670retrotransposon protein, putative, unclassified
LOC_Os05g40460OsAffx.25007.2.S1_at8/115+23683289..23685670retrotransposon protein, putative, unclassified
LOC_Os05g40460OsAffx.25007.1.S1_at6/115+23683289..23685670retrotransposon protein, putative, unclassified
LOC_Os05g40470NANA5+23686036..23687729retrotransposon protein, putative, unclassified
LOC_Os05g40480NANA5+23688447..23691779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g40490NANA5+23694944..23698700Zinc knuckle family protein
LOC_Os05g40500OsAffx.27260.1.S1_at11/115+23700581..23704719F-box domain containing protein
LOC_Os05g40500OsAffx.27260.3.S1_x_at1/115+23700581..23704719F-box domain containing protein
LOC_Os05g40500Os.51294.1.S1_at1/115+23700581..23704719F-box domain containing protein
LOC_Os05g40500OsAffx.27260.2.S1_x_at1/115+23700581..23704719F-box domain containing protein
LOC_Os05g40510OsAffx.27260.4.S1_x_at11/115+23705605..23706798hypothetical protein
LOC_Os05g40510OsAffx.27260.2.S1_x_at1/115+23705605..23706798hypothetical protein
LOC_Os05g40520OsAffx.15041.1.S1_at11/115+23709773..23710984F-box domain containing protein
LOC_Os05g40530OsAffx.15042.1.S1_at11/115+23713390..23713995hypothetical protein
LOC_Os05g40540OsAffx.27261.1.S1_at9/115+23715196..23717082hypothetical protein
LOC_Os05g40540Os.5060.1.S1_at3/115+23715196..23717082hypothetical protein
LOC_Os05g40550Os.54817.1.S1_at11/115+23718193..23719943expressed protein
LOC_Os05g40560OsAffx.4577.1.S1_at11/115+23720115..23720668hypothetical protein
LOC_Os05g40570OsAffx.27260.5.S1_at11/115+23722920..23724107hypothetical protein
LOC_Os05g40570OsAffx.27260.3.S1_x_at1/115+23722920..23724107hypothetical protein
LOC_Os05g40570OsAffx.27260.2.S1_x_at1/115+23722920..23724107hypothetical protein
LOC_Os05g40580OsAffx.27260.2.S1_x_at1/115+23725676..23726842hypothetical protein
LOC_Os05g40590OsAffx.27260.2.S1_x_at11/115+23728221..23729796hypothetical protein
LOC_Os05g40590OsAffx.27260.2.S1_at10/115+23728221..23729796hypothetical protein
LOC_Os05g40600OsAffx.29313.1.S1_at1/115+23730552..23732837Transposable element protein, putative, MuDR

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27260.4.S1_x_at--675--7051Chr05:23706266..23706290 (25 bp)
GTAATCTGGTGATACCGCCCATGGA
LOC_Os05g40510
OsAffx.27260.4.S1_x_at--1142--9751Chr05:23706267..23706291 (25 bp)
TAATCTGGTGATACCGCCCATGGAG
LOC_Os05g40510
OsAffx.27260.4.S1_x_at--986--7891Chr05:23706291..23706315 (25 bp)
GGTTCGCCGATTCTCGCGAGGCGGG
LOC_Os05g40510
OsAffx.27260.4.S1_x_at--310--6051Chr05:23706317..23706341 (25 bp)
GAGATTACGGCGGATGCTTCGCTGT
LOC_Os05g40510
OsAffx.27260.4.S1_x_at--869--7591Chr05:23706473..23706497 (25 bp)
GGGCACCATACGACTGGAAGGAGCT
LOC_Os05g40510
OsAffx.27260.4.S1_x_at--927--2031Chr05:23706563..23706587 (25 bp)
ACTATCCAGGCGACGAGTTCAACGA
LOC_Os05g40510
OsAffx.27260.4.S1_x_at--633--3691Chr05:23706564..23706588 (25 bp)
CTATCCAGGCGACGAGTTCAACGAG
LOC_Os05g40510
OsAffx.27260.4.S1_x_at--72--1892Chr05:23706620..23706644 (25 bp)
ACGATGAGGCGTTCCAAATCCTGAA
LOC_Os05g40510
OsAffx.27260.4.S1_x_at--1128--3031Chr05:23706636..23706660 (25 bp)
AATCCTGAATCCCTTTGCCCAGTAC
LOC_Os05g40510
OsAffx.27260.4.S1_x_at--880--4211Chr05:23706654..23706678 (25 bp)
CCAGTACCGGGAATACCCCTGCAGA
LOC_Os05g40510
OsAffx.27260.4.S1_x_at--749--311Chr05:23706666..23706690 (25 bp)
ATACCCCTGCAGAGATCACGGCAAG
LOC_Os05g40510
Target Sequence 
GTAATCTGGTGATACCGCCCATGGAGGTTCGCCGATTCTCGCGAGGCGGGCGAGATTACGGCGGATGCTTCGCTGTTCGC
TACCTGGTGGAGTCCGGCAAGAGTCTCCTCATGGTCGTCAGGCTCCTTCCTCATCCTCCCCTCTTTCCGCCGACGACATG
GGCGTTCAAGGTGTTCGAGATGGTGGAGACGCCCATCAACAACGACGGGGCACCATACGACTGGAAGGAGCTGGAATCGC
TGGGTGGGCGGGTGCTGTTCGTCGCGCGAGGCTGCTCCAGATCGTACGACGCGGGCGACTATCCAGGCGACGAGTTCAAC
GAGGGCATCTACTTCCTGGATGACGGGAGACTCTACGATGAGGCGTTCCAAATCCTGAATCCCTTTGCCCAGTACCGGGA
ATACCCCTGCAGAGATCACGGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27260.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis