Browse Element(s) Details


OsAffx.27260.2.S1_x_at

Description tigr:9633.m03792
TID=OsAffx.27260.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4059011/11hypothetical protein
LOC_Os05g406105/11F-box domain containing protein
LOC_Os05g405101/11hypothetical protein
LOC_Os05g405801/11hypothetical protein
LOC_Os05g405001/11F-box domain containing protein
LOC_Os05g405701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40500OsAffx.27260.1.S1_at11/115+23700581..23704719F-box domain containing protein
LOC_Os05g40500OsAffx.27260.3.S1_x_at1/115+23700581..23704719F-box domain containing protein
LOC_Os05g40500Os.51294.1.S1_at1/115+23700581..23704719F-box domain containing protein
LOC_Os05g40500OsAffx.27260.2.S1_x_at1/115+23700581..23704719F-box domain containing protein
LOC_Os05g40510OsAffx.27260.4.S1_x_at11/115+23705605..23706798hypothetical protein
LOC_Os05g40510OsAffx.27260.2.S1_x_at1/115+23705605..23706798hypothetical protein
LOC_Os05g40520OsAffx.15041.1.S1_at11/115+23709773..23710984F-box domain containing protein
LOC_Os05g40530OsAffx.15042.1.S1_at11/115+23713390..23713995hypothetical protein
LOC_Os05g40540OsAffx.27261.1.S1_at9/115+23715196..23717082hypothetical protein
LOC_Os05g40540Os.5060.1.S1_at3/115+23715196..23717082hypothetical protein
LOC_Os05g40550Os.54817.1.S1_at11/115+23718193..23719943expressed protein
LOC_Os05g40560OsAffx.4577.1.S1_at11/115+23720115..23720668hypothetical protein
LOC_Os05g40570OsAffx.27260.5.S1_at11/115+23722920..23724107hypothetical protein
LOC_Os05g40570OsAffx.27260.3.S1_x_at1/115+23722920..23724107hypothetical protein
LOC_Os05g40570OsAffx.27260.2.S1_x_at1/115+23722920..23724107hypothetical protein
LOC_Os05g40580OsAffx.27260.2.S1_x_at1/115+23725676..23726842hypothetical protein
LOC_Os05g40590OsAffx.27260.2.S1_x_at11/115+23728221..23729796hypothetical protein
LOC_Os05g40590OsAffx.27260.2.S1_at10/115+23728221..23729796hypothetical protein
LOC_Os05g40600OsAffx.29313.1.S1_at1/115+23730552..23732837Transposable element protein, putative, MuDR
LOC_Os05g40610OsAffx.27260.3.S1_x_at11/115+23735051..23736225F-box domain containing protein
LOC_Os05g40610OsAffx.27260.2.S1_x_at5/115+23735051..23736225F-box domain containing protein
LOC_Os05g40610OsAffx.27260.4.S1_x_at1/115+23735051..23736225F-box domain containing protein
LOC_Os05g40620Os.57244.1.S1_at11/115+23737175..23738886expressed protein
LOC_Os05g40630Os.10422.1.S1_at11/115+23742490..23743418expressed protein
LOC_Os05g40640Os.9332.2.S1_at1/115+23745133..23746141transposon protein, putative, unclassified
LOC_Os05g40640Os.9332.2.S1_x_at1/115+23745133..23746141transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27260.2.S1_x_at--756--10632Chr05:23729046..23729070 (25 bp)
TTCGCTGTTCGTTACCTGGTGGAGT
LOC_Os05g40590
OsAffx.27260.2.S1_x_at--72--4114Chr05:23706419..23706443 (25 bp)
CGACATGGGCGTTCAAGGTGTTCGA
LOC_Os05g40510
OsAffx.27260.2.S1_x_at--534--7633Chr05:23726513..23726537 (25 bp)
GGGACTCCCATCAACAACGACGAGG
LOC_Os05g40580
OsAffx.27260.2.S1_x_at--914--1852Chr05:23728901..23728925 (25 bp)
ACGACGAGGCACCATACGCTTGGAA
LOC_Os05g40590
OsAffx.27260.2.S1_x_at--231--11Chr05:23728793..23728817 (25 bp)
ATGAGTTCAAGGAGGGCGTCTACTT
LOC_Os05g40590
OsAffx.27260.2.S1_x_at--995--6291Chr05:23728746..23728770 (25 bp)
GATGAGGCGTCCCAATTCGTGAATC
LOC_Os05g40590
OsAffx.27260.2.S1_x_at--327--10333Chr05:23706722..23707208 (25 bp)
TTACCGGCCGCGTGGACAAGCTCTT
NONE
OsAffx.27260.2.S1_x_at--1048--8052Chr05:23735075..23735099 (25 bp)
GGAGCAAGGCCCGTCGTACTACACG
LOC_Os05g40610
OsAffx.27260.2.S1_x_at--875--9851Chr05:23728602..23728626 (25 bp)
TACACGTCGCCGGTTTGGATTCTGC
LOC_Os05g40590
OsAffx.27260.2.S1_x_at--111--9571Chr05:23728264..23728288 (25 bp)
TCTTCCCTCTTCGAAAGTCGCTTAA
LOC_Os05g40590
OsAffx.27260.2.S1_x_at--927--2311Chr05:23728251..23728275 (25 bp)
AAAGTCGCTTAATCAGCATGGCATC
LOC_Os05g40590
Target Sequence 
TTCGCTGTTCGTTACCTGGTGGAGTCCGGCGAGAGTCTCCTCATGGTCGTCAGGCTCGTTCCTCATCCTCCCCTCTTTCC
GCCGACGACATGGGCGTTCAAGGTGTTCGAGATGGTGGAGACGCCGCTGGGGACTCCCATCAACAACGACGAGGCACCAT
ACGCTTGGAAGGAGCTGGAATCGCTGGGTGGGCGGATGCTGTTCGTCTCGCGAGGCTGCTCCAGATCGTACGATGCGAAC
AAGTATCCGGGCGATGAGTTCAAGGAGGGCGTCTACTTCCTGGATGACGGGAGACTCTACGATGAGGCGTCCCAATTCGT
GAATCCCCTTCCCCAGTACCCCTGCAGCGACAACGGCAAGTGGCTGCCGCCGCCGCCGGCGGCGGCGGCGGAGGCGGTTA
CCGGCCGCGTGGACAAGCTCTTGCCGGAGCAAGGCCCGTCGTACTACACGTCGCCGGTTTGGATTCTGCCGCTAATCCTC
CTCTTCCCTCTTCGAAAGTCGCTTAATCAGCATGGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27260.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis