Browse Element(s) Details


Os.57244.1.S1_at

Description gb:AK111182.1
DB_XREF= gi:32996391
TID=Os.57244.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57244 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-177-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-177-G04, full insert sequence.
FL= gb:AK111182.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4062011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40530OsAffx.15042.1.S1_at11/115+23713390..23713995hypothetical protein
LOC_Os05g40540OsAffx.27261.1.S1_at9/115+23715196..23717082hypothetical protein
LOC_Os05g40540Os.5060.1.S1_at3/115+23715196..23717082hypothetical protein
LOC_Os05g40550Os.54817.1.S1_at11/115+23718193..23719943expressed protein
LOC_Os05g40560OsAffx.4577.1.S1_at11/115+23720115..23720668hypothetical protein
LOC_Os05g40570OsAffx.27260.5.S1_at11/115+23722920..23724107hypothetical protein
LOC_Os05g40570OsAffx.27260.3.S1_x_at1/115+23722920..23724107hypothetical protein
LOC_Os05g40570OsAffx.27260.2.S1_x_at1/115+23722920..23724107hypothetical protein
LOC_Os05g40580OsAffx.27260.2.S1_x_at1/115+23725676..23726842hypothetical protein
LOC_Os05g40590OsAffx.27260.2.S1_x_at11/115+23728221..23729796hypothetical protein
LOC_Os05g40590OsAffx.27260.2.S1_at10/115+23728221..23729796hypothetical protein
LOC_Os05g40600OsAffx.29313.1.S1_at1/115+23730552..23732837Transposable element protein, putative, MuDR
LOC_Os05g40610OsAffx.27260.3.S1_x_at11/115+23735051..23736225F-box domain containing protein
LOC_Os05g40610OsAffx.27260.2.S1_x_at5/115+23735051..23736225F-box domain containing protein
LOC_Os05g40610OsAffx.27260.4.S1_x_at1/115+23735051..23736225F-box domain containing protein
LOC_Os05g40620Os.57244.1.S1_at11/115+23737175..23738886expressed protein
LOC_Os05g40630Os.10422.1.S1_at11/115+23742490..23743418expressed protein
LOC_Os05g40640Os.9332.2.S1_at1/115+23745133..23746141transposon protein, putative, unclassified
LOC_Os05g40640Os.9332.2.S1_x_at1/115+23745133..23746141transposon protein, putative, unclassified
LOC_Os05g40650Os.54633.1.S1_at11/115+23756204..23759277cation/hydrogen exchanger, putative, expressed
LOC_Os05g40660Os.38751.1.A1_at5/115+23761324..23766044hypothetical protein
LOC_Os05g40660OsAffx.1198.1.S1_at2/115+23761324..23766044hypothetical protein
LOC_Os05g40660OsAffx.8338.1.S1_x_at1/115+23761324..23766044hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57244.1.S1_at--264--6111Chr05:23738414..23738438 (25 bp)
GAGTCGACAGTGTTCGCTTCTCGCG
LOC_Os05g40620
Os.57244.1.S1_at--527--51Chr05:23738626..23738650 (25 bp)
ATTGATTTGTTCGAGATGTCCTTCT
LOC_Os05g40620
Os.57244.1.S1_at--537--3651Chr05:23738646..23738670 (25 bp)
CTTCTCCTCTTGTTTGGGTGGATGA
LOC_Os05g40620
Os.57244.1.S1_at--608--7991Chr05:23738665..23738689 (25 bp)
GGATGATGTAGTCTTCCTGATCCGG
LOC_Os05g40620
Os.57244.1.S1_at--671--4271Chr05:23738680..23738704 (25 bp)
CCTGATCCGGTATGATAATTCTCGA
LOC_Os05g40620
Os.57244.1.S1_at--914--6891Chr05:23738712..23738736 (25 bp)
GTATAATTCTCCTTGCTGAGTCAGA
LOC_Os05g40620
Os.57244.1.S1_at--389--4751Chr05:23738726..23738750 (25 bp)
GCTGAGTCAGACTTGCATGAACGCA
LOC_Os05g40620
Os.57244.1.S1_at--847--7391Chr05:23738757..23738781 (25 bp)
GTGATGTGATCTCTGGACTCTGGTC
LOC_Os05g40620
Os.57244.1.S1_at--1033--5711Chr05:23738772..23738796 (25 bp)
GACTCTGGTCTGATGATTTGTATGA
LOC_Os05g40620
Os.57244.1.S1_at--161--3011Chr05:23738796..23738820 (25 bp)
AATGCAGCAACGTTTTGGCTTTCAG
LOC_Os05g40620
Os.57244.1.S1_at--1152--7011Chr05:23738820..23738844 (25 bp)
GTACTTGGATTGAGTCTATGCATCA
LOC_Os05g40620
Target Sequence 
GAGTCGACAGTGTTCGCTTCTCGCGCCGTCGCGGGGAAATACCCCTGCAGAGACACCGGCAAGTGGCTACCGGCGGCGGA
TGCGGCGGGGGTTCCGCGTGTGGACAAGTTCTTGCCGGAGCAAGGCCCGTCGGACTACTCACCGCCGGCGTGGCTTCTCC
CCTGAGATTGCTCATGTTAGTTTTGATCGTCCTGGTACAGGTATGATTCGCTATTGATTTGTTCGAGATGTCCTTCTCCT
CTTGTTTGGGTGGATGATGTAGTCTTCCTGATCCGGTATGATAATTCTCGATCAATCAGTATAATTCTCCTTGCTGAGTC
AGACTTGCATGAACGCAATGCATGTGATGTGATCTCTGGACTCTGGTCTGATGATTTGTATGAATGCAGCAACGTTTTGG
CTTTCAGTACTTGGATTGAGTCTATGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis