Browse Element(s) Details


Os.10422.1.S1_at

Description gb:AK071834.1
DB_XREF= gi:32981857
TID=Os.10422.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118G11, full insert sequence.
FL= gb:AK071834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4063011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40550Os.54817.1.S1_at11/115+23718193..23719943expressed protein
LOC_Os05g40560OsAffx.4577.1.S1_at11/115+23720115..23720668hypothetical protein
LOC_Os05g40570OsAffx.27260.5.S1_at11/115+23722920..23724107hypothetical protein
LOC_Os05g40570OsAffx.27260.3.S1_x_at1/115+23722920..23724107hypothetical protein
LOC_Os05g40570OsAffx.27260.2.S1_x_at1/115+23722920..23724107hypothetical protein
LOC_Os05g40580OsAffx.27260.2.S1_x_at1/115+23725676..23726842hypothetical protein
LOC_Os05g40590OsAffx.27260.2.S1_x_at11/115+23728221..23729796hypothetical protein
LOC_Os05g40590OsAffx.27260.2.S1_at10/115+23728221..23729796hypothetical protein
LOC_Os05g40600OsAffx.29313.1.S1_at1/115+23730552..23732837Transposable element protein, putative, MuDR
LOC_Os05g40610OsAffx.27260.3.S1_x_at11/115+23735051..23736225F-box domain containing protein
LOC_Os05g40610OsAffx.27260.2.S1_x_at5/115+23735051..23736225F-box domain containing protein
LOC_Os05g40610OsAffx.27260.4.S1_x_at1/115+23735051..23736225F-box domain containing protein
LOC_Os05g40620Os.57244.1.S1_at11/115+23737175..23738886expressed protein
LOC_Os05g40630Os.10422.1.S1_at11/115+23742490..23743418expressed protein
LOC_Os05g40640Os.9332.2.S1_at1/115+23745133..23746141transposon protein, putative, unclassified
LOC_Os05g40640Os.9332.2.S1_x_at1/115+23745133..23746141transposon protein, putative, unclassified
LOC_Os05g40650Os.54633.1.S1_at11/115+23756204..23759277cation/hydrogen exchanger, putative, expressed
LOC_Os05g40660Os.38751.1.A1_at5/115+23761324..23766044hypothetical protein
LOC_Os05g40660OsAffx.1198.1.S1_at2/115+23761324..23766044hypothetical protein
LOC_Os05g40660OsAffx.8338.1.S1_x_at1/115+23761324..23766044hypothetical protein
LOC_Os05g40670OsAffx.29607.5.S1_x_at9/115+23766286..23768989transposon protein, putative, unclassified
LOC_Os05g40670OsAffx.29607.3.S1_x_at6/115+23766286..23768989transposon protein, putative, unclassified
LOC_Os05g40670Os.37083.2.S1_at1/115+23766286..23768989transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10422.1.S1_at--513--7251Chr05:23743041..23743065 (25 bp)
GTCCGCCGCAAGAAGGCGATCGGCA
LOC_Os05g40630
Os.10422.1.S1_at--738--5051Chr05:23742908..23742932 (25 bp)
GCAGCGTCAAGACCATGGCGCACGT
LOC_Os05g40630
Os.10422.1.S1_at--562--6031Chr05:23742837..23742861 (25 bp)
GAGATCGAAGGCTCGTACCTGCGGC
LOC_Os05g40630
Os.10422.1.S1_at--121--1311Chr05:23742665..23742689 (25 bp)
AGATGTTCGGCAAGCCCTCCCTGCT
LOC_Os05g40630
Os.10422.1.S1_at--76--5891Chr05:23742637..23742661 (25 bp)
GAGCTGGTCCTCCTAATAATTAGCC
LOC_Os05g40630
Os.10422.1.S1_at--257--8931Chr05:23742624..23742648 (25 bp)
TAATAATTAGCCTGTTTCTTTCTTT
LOC_Os05g40630
Os.10422.1.S1_at--1021--10351Chr05:23742582..23742606 (25 bp)
TTTTTTGGCCTTGAATTTCCAACAT
LOC_Os05g40630
Os.10422.1.S1_at--22--191Chr05:23742568..23742592 (25 bp)
ATTTCCAACATTGTTTGGGCCTGAG
LOC_Os05g40630
Os.10422.1.S1_at--737--1451Chr05:23742540..23742564 (25 bp)
AGAAGAGTTGCTCTTGGCTGCCTCT
LOC_Os05g40630
Os.10422.1.S1_at--444--9191Chr05:23742522..23742546 (25 bp)
TGCCTCTTTCTCTCTGATCCTGAAA
LOC_Os05g40630
Os.10422.1.S1_at--342--6371Chr05:23742507..23742531 (25 bp)
GATCCTGAAATGAAACCTCAAATTG
LOC_Os05g40630
Target Sequence 
GTCCGCCGCAAGAAGGCGATCGGCAGCCAGCTCGGGNCTTGGGGGCGACCAGTGGCTGGTCCACCCCGGGGAGGAGACCC
GCCTCCCGCCGCTCTACNCCGTGAAGCGGANCGCCGCAGTACGTCCGCGGCGGCGGCAGCGTCAAGACCATGGCGCACGT
CNGCGCCCTGCGGCGTCGCCCTCGGCGCCNGCGGCGGCGGTGGCTACGAGATCGAAGGCTCGTACCTGCGGCGGANCTGC
GCGGTGTANCGNNNCGCGGCGGCGCGCGGTGGTGGCGGAGGTGCAGGCGAAGGAGGCNGTGGGGACGGACGTGTTCCGGC
TGGTGGTGCGGCCGGGGATGGAGGTGTCGGTGGCCATGGCCGTCGTGCTGGCGCTGGAGCAGATGTTCGGCAAGCCCTCC
CTGCTCAGGAGCTGGTCCTCCTAATAATTAGCCTGTTTCTTTCTTTCTCTTTTTTTTTCTTTTTTTTTTTGGCCTTGAAT
TTCCAACATTGTTTGGGCCTGAGAGCAGAAGAGTTGCTCTTGGCTGCCTCTTTCTCTCTGATCCTGAAATGAAACCTCAA
ATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis