Browse Element(s) Details


OsAffx.27260.3.S1_x_at

Description tigr:9633.m03794
TID=OsAffx.27260.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4061011/11F-box domain containing protein
LOC_Os05g405001/11F-box domain containing protein
LOC_Os05g405701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40520OsAffx.15041.1.S1_at11/115+23709773..23710984F-box domain containing protein
LOC_Os05g40530OsAffx.15042.1.S1_at11/115+23713390..23713995hypothetical protein
LOC_Os05g40540OsAffx.27261.1.S1_at9/115+23715196..23717082hypothetical protein
LOC_Os05g40540Os.5060.1.S1_at3/115+23715196..23717082hypothetical protein
LOC_Os05g40550Os.54817.1.S1_at11/115+23718193..23719943expressed protein
LOC_Os05g40560OsAffx.4577.1.S1_at11/115+23720115..23720668hypothetical protein
LOC_Os05g40570OsAffx.27260.5.S1_at11/115+23722920..23724107hypothetical protein
LOC_Os05g40570OsAffx.27260.3.S1_x_at1/115+23722920..23724107hypothetical protein
LOC_Os05g40570OsAffx.27260.2.S1_x_at1/115+23722920..23724107hypothetical protein
LOC_Os05g40580OsAffx.27260.2.S1_x_at1/115+23725676..23726842hypothetical protein
LOC_Os05g40590OsAffx.27260.2.S1_x_at11/115+23728221..23729796hypothetical protein
LOC_Os05g40590OsAffx.27260.2.S1_at10/115+23728221..23729796hypothetical protein
LOC_Os05g40600OsAffx.29313.1.S1_at1/115+23730552..23732837Transposable element protein, putative, MuDR
LOC_Os05g40610OsAffx.27260.3.S1_x_at11/115+23735051..23736225F-box domain containing protein
LOC_Os05g40610OsAffx.27260.2.S1_x_at5/115+23735051..23736225F-box domain containing protein
LOC_Os05g40610OsAffx.27260.4.S1_x_at1/115+23735051..23736225F-box domain containing protein
LOC_Os05g40620Os.57244.1.S1_at11/115+23737175..23738886expressed protein
LOC_Os05g40630Os.10422.1.S1_at11/115+23742490..23743418expressed protein
LOC_Os05g40640Os.9332.2.S1_at1/115+23745133..23746141transposon protein, putative, unclassified
LOC_Os05g40640Os.9332.2.S1_x_at1/115+23745133..23746141transposon protein, putative, unclassified
LOC_Os05g40650Os.54633.1.S1_at11/115+23756204..23759277cation/hydrogen exchanger, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27260.3.S1_x_at--409--712Chr05:23723545..23723569 (25 bp)
ATGTTTTTCCTGTAGCGGGCTTCCA
LOC_Os05g40570
OsAffx.27260.3.S1_x_at--284--5871Chr05:23735496..23735520 (25 bp)
GAGCCATCGCTGTTCGTTACCTGGT
LOC_Os05g40610
OsAffx.27260.3.S1_x_at--1012--93716Chr11:5685445..5685464 (20 bp)
TCGAGATGGTGCATGAGACGCCCAT
NONE
OsAffx.27260.3.S1_x_at--134--62517Chr11:5685447..5685846 (25 bp)
GATGGTGCATGAGACGCCCATCAAC
NONE
OsAffx.27260.3.S1_x_at--347--8611Chr05:23735379..23735403 (25 bp)
TGGTGCATGAGACGCCCATCAACAA
LOC_Os05g40610
OsAffx.27260.3.S1_x_at--164--1871Chr05:23735271..23735295 (25 bp)
ACGACGCGGACAAGTATCCGGGCGC
LOC_Os05g40610
OsAffx.27260.3.S1_x_at--549--1791Chr05:23735268..23735292 (25 bp)
ACGCGGACAAGTATCCGGGCGCCGA
LOC_Os05g40610
OsAffx.27260.3.S1_x_at--1050--5592Chr05:23735263..23735287 (25 bp)
GACAAGTATCCGGGCGCCGAGTTCA
LOC_Os05g40610
OsAffx.27260.3.S1_x_at--71--1891Chr05:23735202..23735226 (25 bp)
ACGATGAGGCGTTCCAAATCTTGAA
LOC_Os05g40610
OsAffx.27260.3.S1_x_at--1126--8351Chr05:23735195..23735219 (25 bp)
GGCGTTCCAAATCTTGAATCCCTTT
LOC_Os05g40610
OsAffx.27260.3.S1_x_at--462--3071Chr05:23735186..23735210 (25 bp)
AATCTTGAATCCCTTTGCCCAGTTC
LOC_Os05g40610
Target Sequence 
ATGTTTTTCCTGTAGCGGGCTTCCACGAAGACGACGACGGCAATCTGGAGATACCGCCCATGGTGGTTCGCCGCTTCTCG
CGTGGTGGGCGAGATTACGGCGGAGCCATCGCTGTTCGTTACCTGGTGGAGTCCGGCGAGAATCTCCTCATGGTCGTCAG
GCTCGTTCCTCATCCTCCCCAACTGCCGCCGGGGACATGGGCGTTCAAGGTGTTCGAGATGGTGCATGAGACGCCCATCA
ACAACGACGGGGCACCATACGCTTGGAAGGAGCTGGAATCGCTGGGTGGGCGGATGTTGTTCGTCGCGCGAGGCTGCTCC
AGATCGTACGACGCGGACAAGTATCCGGGCGCCGAGTTCAACGAGGGCGTCTACTTCCTGGATGACGGGAGACTCTACGA
TGAGGCGTTCCAAATCTTGAATCCCTTTGCCCAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27260.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis