Browse Element(s) Details


OsAffx.27267.1.S1_at

Description tigr:9633.m03832
TID=OsAffx.27267.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to transfactor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4096011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40900Os.26497.1.S1_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.4583.1.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.4.S1_s_at11/115+23907303..23911230expressed protein
LOC_Os05g40900OsAffx.19953.5.S1_x_at11/115+23907303..23911230expressed protein
LOC_Os05g40910Os.51274.1.S1_at9/115+23912941..23914408expressed protein
LOC_Os05g40920Os.56288.1.S1_at11/115+23917060..23919400expressed protein
LOC_Os05g40930NANA5+23923527..23924994retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g40940OsAffx.25819.2.S1_at11/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.25819.3.S1_at3/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.25819.1.S1_at1/115+23925218..23927091hypothetical protein
LOC_Os05g40940OsAffx.13875.1.S1_at1/115+23925218..23927091hypothetical protein
LOC_Os05g40950Os.56225.1.S1_at11/115+23930253..23931294expressed protein
LOC_Os05g40960OsAffx.27267.1.S1_at11/115+23932212..23934242myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g40970NANA5+23936885..23938426expressed protein
LOC_Os05g40980Os.24217.1.A1_s_at11/115+23940462..23942904Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g40990Os.6676.1.S1_at11/115+23944568..23947596oxidoreductase, FAD-binding family protein, expressed
LOC_Os05g41000Os.17783.1.S1_at11/115+23950403..23955844Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g41010Os.25020.1.S1_at11/115+23957763..23960697oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27267.1.S1_at--212--671Chr05:23932768..23932792 (25 bp)
ATGAATGTCTCAGCAACGCAGTTAC
LOC_Os05g40960
OsAffx.27267.1.S1_at--878--6871Chr05:23932723..23932747 (25 bp)
GTATACACAGACTAGAGCCAAGGCA
LOC_Os05g40960
OsAffx.27267.1.S1_at--970--5851Chr05:23932709..23932733 (25 bp)
GAGCCAAGGCAAATCCAGTTTGTTG
LOC_Os05g40960
OsAffx.27267.1.S1_at--210--4391Chr05:23932676..23932700 (25 bp)
GCCAATAACTGTTTGACTGCAGCTG
LOC_Os05g40960
OsAffx.27267.1.S1_at--396--8051Chr05:23932641..23932665 (25 bp)
GGAGCATAGGCTACAAAACCACGGG
LOC_Os05g40960
OsAffx.27267.1.S1_at--671--10191Chr05:23932588..23932612 (25 bp)
TATTTTGCCGAAAACAGTCCCAAGA
LOC_Os05g40960
OsAffx.27267.1.S1_at--292--5251Chr05:23932559..23932583 (25 bp)
GAATCTCAATATTCCCTTAACAGAA
LOC_Os05g40960
OsAffx.27267.1.S1_at--343--5291Chr05:23932519..23932543 (25 bp)
GAATGGGTCATCTGTATAGCGGTAA
LOC_Os05g40960
OsAffx.27267.1.S1_at--316--7351Chr05:23932471..23932495 (25 bp)
GTGACAGTGATACAGAGGTTCTACA
LOC_Os05g40960
OsAffx.27267.1.S1_at--625--7891Chr05:23932455..23932479 (25 bp)
GGTTCTACATGAGTATATCACGCCT
LOC_Os05g40960
OsAffx.27267.1.S1_at--537--8011Chr05:23932418..23932442 (25 bp)
GGAGGCAGCACAACCAGTTCAACAT
LOC_Os05g40960
Target Sequence 
ATGAATGTCTCAGCAACGCAGTTACAGAAATAAGAGAAAGTTCAAGTATACACAGACTAGAGCCAAGGCAAATCCAGTTT
GTTGAAAGTTCAGCCAATAACTGTTTGACTGCAGCTGAAGGATTCAAGGAGCATAGGCTACAAAACCACGGGGTACTCAA
AGCATATGATGATAGTACATTATTTTGCCGAAAACAGTCCCAAGATCAAGAATCTCAATATTCCCTTAACAGAAGCTTAA
GTGAGCGTAGAATGGGTCATCTGTATAGCGGTAAACAGTATCACAAATCAGAGGGAAGTGACAGTGATACAGAGGTTCTA
CATGAGTATATCACGCCTCAAAAGAATGGCGGAGGCAGCACAACCAGTTCAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis