Browse Element(s) Details


OsAffx.27280.1.S1_at

Description tigr:9633.m03930
TID=OsAffx.27280.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4189011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41850NANA5+24422889..24428432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41860NANA5+24429352..24432212retrotransposon protein, putative, unclassified
LOC_Os05g41870Os.55122.1.S1_at10/115+24435620..24436534expressed protein
LOC_Os05g41880NANA5+24439704..24449084MutS domain V family protein, expressed
LOC_Os05g41890OsAffx.27280.1.S1_at11/115+24450020..24452523expressed protein
LOC_Os05g41890OsAffx.27097.1.S1_at1/115+24450020..24452523expressed protein
LOC_Os05g41900Os.7715.1.S1_a_at11/115+24454593..24456729Protein translation factor SUI1 homolog, putative, expressed
LOC_Os05g41910Os.20824.1.S1_at6/115+24457976..24461094expressed protein
LOC_Os05g41910OsAffx.1609.1.A1_x_at1/115+24457976..24461094expressed protein
LOC_Os05g41920OsAffx.15064.1.S1_at11/115+24467975..24468640expressed protein
LOC_Os05g41930Os.5023.1.S1_at11/115+24469194..24471959gda-1, putative, expressed
LOC_Os05g41940Os.46557.1.S1_x_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.1.S1_at11/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.46557.2.S1_x_at6/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.10967.4.S1_at3/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940Os.8753.4.S1_x_at2/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g41940OsAffx.7664.1.S1_x_at1/115+24477290..24480676transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27280.1.S1_at--222--6411Chr05:24452382..24452406 (25 bp)
GATCTGGCAGAATCCAGCTCGTGGC
LOC_Os05g41890
OsAffx.27280.1.S1_at--1045--3951Chr05:24452354..24452378 (25 bp)
CGGATCCACTGGTATTTTGGCTGAT
LOC_Os05g41890
OsAffx.27280.1.S1_at--1027--9672Chr07:3114053..3114077 (25 bp)
TCACGCCTCCCTCTATTGGATATGG
NONE
OsAffx.27280.1.S1_at--311--9552Chr07:3114100..3114123 (24 bp)
TCTATCTGCTGGATCCGATGGCGAG
NONE
OsAffx.27280.1.S1_at--67--6231Chr05:24452119..24452143 (25 bp)
GAGGCCGTCGGTTCTAGCCCGTGAA
LOC_Os05g41890
OsAffx.27280.1.S1_at--397--2971Chr05:24450889..24450910 (22 bp)
AATGGTTCCATGCAGCCTGGTCTAC
LOC_Os05g41890
OsAffx.27280.1.S1_at--260--5351Chr05:24450838..24450862 (25 bp)
GAAGTTGACCAGATCACCTTTGTGT
LOC_Os05g41890
OsAffx.27280.1.S1_at--577--7791Chr05:24450812..24450836 (25 bp)
GGTCGAAGGCCAACAGTTTAGTCAC
LOC_Os05g41890
OsAffx.27280.1.S1_at--92--6831Chr05:24450797..24450821 (25 bp)
GTTTAGTCACTGCATCCTGAAATTA
LOC_Os05g41890
OsAffx.27280.1.S1_at--627--1271Chr05:24450758..24450782 (25 bp)
AGATCACTTTCAGATTCGCGTGCCT
LOC_Os05g41890
OsAffx.27280.1.S1_at--1071--6571Chr05:24450746..24450770 (25 bp)
GATTCGCGTGCCTATATTGCATTTA
LOC_Os05g41890
Target Sequence 
GATCTGGCAGAATCCAGCTCGTGGCCGCCGGATCCACTGGTATTTTGGCTGATGAAGGAAGGGAAGAGAAGCAGCCAAGA
TGGGGAATCCGTGACCAGTGAGGAGGAATCCGGTGGCCGGCGAGGTTGGAGGCGGTGGCGCAGAGAGGGGCAGTCGCCGA
AACCTCCAGCGAGCTCCTTCACGCCTCCCTCTATTGGATATGGCGGCAGTGTCCTCCGTCGAGCCTCTATCTGCTGGATC
CGATGGCGAGTGGCGACGTGCTCGAGGCCGTCGGTTCTAGCCCGTGAAGTAGAGACGGAGACGGAAGCTGTGGAGAAGTC
GGTGAGGGTTAAGGATCTCGAGGTTGGAGACAATGGTTCCATGCAGCCTGGTCTACAGCTAGGACGGAAAAACTTCCTGG
AAGAAGTTGACCAGATCACCTTTGTGTGGGTCGAAGGCCAACAGTTTAGTCACTGCATCCTGAAATTATTCACACAAAGA
ATAGATCACTTTCAGATTCGCGTGCCTATATTGCATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis