Browse Element(s) Details


OsAffx.27306.1.S1_at

Description tigr:9633.m04144
TID=OsAffx.27306.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4438011/11MPPN domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44330Os.25529.1.S1_at11/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44330Os.53160.1.S1_at10/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44340Os.8971.1.S1_at11/115+25720401..25723954Heat shock protein 101, putative, expressed
LOC_Os05g44350Os.52818.1.S1_at11/115+25724424..25727740expressed protein
LOC_Os05g44360Os.26690.1.S2_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44360Os.26690.1.S1_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44370OsAffx.27305.1.S1_at10/115+25735041..25736085hypothetical protein
LOC_Os05g44380OsAffx.27306.1.S1_at11/115+25737777..25739599MPPN domain containing protein, expressed
LOC_Os05g44390Os.14123.1.S1_x_at11/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44390Os.14123.2.S1_at9/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44400OsAffx.27307.1.S1_at11/115+25749263..25751409GATA zinc finger family protein, expressed
LOC_Os05g44410NANA5+25763136..25764371hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27306.1.S1_at--314--6491Chr05:25738657..25738681 (25 bp)
GATACCAACCTTGTTATCCGGGAAT
LOC_Os05g44380
OsAffx.27306.1.S1_at--936--7051Chr05:25738618..25738642 (25 bp)
GTAATTTTGCGGCATCACTCTGGTC
LOC_Os05g44380
OsAffx.27306.1.S1_at--750--5591Chr05:25738155..25738179 (25 bp)
GACAATTTTCAGTCCTGGTCTGGGT
LOC_Os05g44380
OsAffx.27306.1.S1_at--1001--10111Chr05:25738085..25738109 (25 bp)
TATGATGCTCGGAAAGCCCTTCAAA
LOC_Os05g44380
OsAffx.27306.1.S1_at--1118--7451Chr05:25738054..25738078 (25 bp)
GTGTCCAGCTAAGCAGTGGCGTCAT
LOC_Os05g44380
OsAffx.27306.1.S1_at--974--2911Chr05:25737961..25737985 (25 bp)
AAGGAGGCTTCATGGTTTCCTTGCC
LOC_Os05g44380
OsAffx.27306.1.S1_at--428--4451Chr05:25737939..25737963 (25 bp)
GCCTCCAAAGTCTCTTGTTCTGAAG
LOC_Os05g44380
OsAffx.27306.1.S1_at--17--2791Chr05:25737917..25737941 (25 bp)
AAGGGTACCGGTGCGTCGAATCAGT
LOC_Os05g44380
OsAffx.27306.1.S1_at--195--5251Chr05:25737900..25737924 (25 bp)
GAATCAGTTGGGAGCCTTGCCACGC
LOC_Os05g44380
OsAffx.27306.1.S1_at--659--5791Chr05:25737839..25737863 (25 bp)
GACGCTAACCGTCGTGCAACAGGTA
LOC_Os05g44380
OsAffx.27306.1.S1_at--723--2491Chr05:25737822..25737846 (25 bp)
AACAGGTAGCGTTGCTGCACCAGCA
LOC_Os05g44380
Target Sequence 
GATACCAACCTTGTTATCCGGGAATTTGAGAAATGCGGAGTAATTTTGCGGCATCACTCTGGTCCACGAGATGAATTTCA
CATTGTTGATATGACAAAACTGACAATTTTCAGTCCTGGTCTGGGTCTTATACTGACAATAATGTTTGTGTACTTGGCTT
TGAAGCACTCTTATGATGCTCGGAAAGCCCTTCAAAAGAATGGTGTCCAGCTAAGCAGTGGCGTCATTATTGGGGTGAAG
CCTATTGATCCAATGCATAGGCAGCAGCTCGATGAGAGGTTCGCTGGAAACAAACAAGGAGGCTTCATGGTTTCCTTGCC
TCCAAAGTCTCTTGTTCTGAAGGGTACCGGTGCGTCGAATCAGTTGGGAGCCTTGCCACGCCCCTATGATCCTAAAGCTA
ACACAAATGTTATCAGAGACGCTAACCGTCGTGCAACAGGTAGCGTTGCTGCACCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis