Browse Element(s) Details


OsAffx.27334.1.S1_at

Description tigr:9633.m04308
TID=OsAffx.27334.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4594011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45900OsAffx.4629.1.S1_at11/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45900Os.25117.1.A1_at1/115+26512877..26518005Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os05g45910Os.7768.1.S1_at8/115+26521718..26523938expressed protein
LOC_Os05g45920OsAffx.15118.1.S1_at8/115+26525016..26529165S1 RNA binding domain containing protein, expressed
LOC_Os05g45930Os.4979.1.S1_at11/115+26533272..26537588IQ calmodulin-binding motif family protein, expressed
LOC_Os05g45940OsAffx.27334.1.S1_at11/115+26541060..26541486hypothetical protein
LOC_Os05g45950Os.4771.1.S1_at11/115+26544902..26548295Outer mitochondrial membrane protein porin, putative, expressed
LOC_Os05g45960Os.14081.1.S1_at11/115+26551605..26557592aldehyde dehydrogenase, putative, expressed
LOC_Os05g45970Os.35344.3.S1_x_at8/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970Os.35344.18.S1_x_at8/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970OsAffx.22940.5.S1_at7/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970OsAffx.22940.5.S1_x_at5/115+26557854..26564794transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27334.1.S1_at--809--5151Chr05:26541416..26541440 (25 bp)
GAATAGGCGGCAGTGTTGTTATCGC
LOC_Os05g45940
OsAffx.27334.1.S1_at--256--271Chr05:26541414..26541438 (25 bp)
ATAGGCGGCAGTGTTGTTATCGCGA
LOC_Os05g45940
OsAffx.27334.1.S1_at--339--8271Chr05:26541408..26541432 (25 bp)
GGCAGTGTTGTTATCGCGAGAGGAT
LOC_Os05g45940
OsAffx.27334.1.S1_at--444--6332Chr06:4749719..4749738 (20 bp)
GATGCAGCGATTGGGTGGCGCCACT
NONE
OsAffx.27334.1.S1_at--676--7671Chr05:26541312..26541336 (25 bp)
GGGATTCAGCGATTCATAGCTAGCC
LOC_Os05g45940
OsAffx.27334.1.S1_at--148--6571Chr05:26541310..26541334 (25 bp)
GATTCAGCGATTCATAGCTAGCCCT
LOC_Os05g45940
OsAffx.27334.1.S1_at--936--10511Chr05:26541308..26541332 (25 bp)
TTCAGCGATTCATAGCTAGCCCTGG
LOC_Os05g45940
OsAffx.27334.1.S1_at--948--9651Chr05:26541307..26541331 (25 bp)
TCAGCGATTCATAGCTAGCCCTGGG
LOC_Os05g45940
OsAffx.27334.1.S1_at--1130--1631Chr05:26541305..26541329 (25 bp)
AGCGATTCATAGCTAGCCCTGGGCG
LOC_Os05g45940
OsAffx.27334.1.S1_at--50--6571Chr05:26541302..26541326 (25 bp)
GATTCATAGCTAGCCCTGGGCGTTC
LOC_Os05g45940
OsAffx.27334.1.S1_at--867--291Chr05:26541297..26541321 (25 bp)
ATAGCTAGCCCTGGGCGTTCTGAGC
LOC_Os05g45940
Target Sequence 
GAATAGGCGGCAGTGTTGTTATCGCGAGAGGATGGCGCGGCGCCGGGGACTGCGTGATGCAGCGATTGGGTGGCGCCACT
GTGGGGTCAGCGCGTTCGCTGGTGGGGATTCAGCGATTCATAGCTAGCCCTGGGCGTTCTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis