Browse Element(s) Details


OsAffx.27340.1.S1_at

Description tigr:9633.m04362
TID=OsAffx.27340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to fiber protein Fb11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4645010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46380Os.53994.1.S1_at11/115+26801686..26804062F-box domain containing protein, expressed
LOC_Os05g46390OsAffx.27337.1.S1_at11/115+26805728..26807332F-box domain containing protein
LOC_Os05g46420Os.5372.1.S1_at11/115+26816857..26818265expressed protein
LOC_Os05g46430Os.7054.2.S1_x_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46430Os.7054.1.S1_a_at11/115+26818716..26821741Ribosomal L28e protein family protein, expressed
LOC_Os05g46440OsAffx.27339.1.S1_s_at10/115+26823935..26824332expressed protein
LOC_Os05g46450OsAffx.27340.1.S1_at10/115+26824875..26827544expressed protein
LOC_Os05g46460Os.6023.1.S1_s_at11/115+26830088..26834118hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os05g46470Os.23829.1.S1_at4/115+26839226..26840128hypothetical protein
LOC_Os05g46480Os.12551.1.S1_s_at11/115+26844337..26845612Late embryogenesis abundant protein, expressed
LOC_Os05g46490Os.14093.1.S1_at11/115+26847829..26852599mov34 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27340.1.S1_at--170--4491Chr05:26827223..26827475 (25 bp)
GCCGGATTCGGGTTCTCAAATCGCT
LOC_Os05g46450
OsAffx.27340.1.S1_at--378--771Chr05:26827221..26827473 (25 bp)
CGGATTCGGGTTCTCAAATCGCTTC
LOC_Os05g46450
OsAffx.27340.1.S1_at--616--2271Chr05:26827206..26827230 (25 bp)
AAATCGCTTCAGAGGTGTTCTTCTT
LOC_Os05g46450
OsAffx.27340.1.S1_at--18--4911Chr05:26827201..26827225 (25 bp)
GCTTCAGAGGTGTTCTTCTTTGCAA
LOC_Os05g46450
OsAffx.27340.1.S1_at--332--6731Chr05:26827190..26827214 (25 bp)
GTTCTTCTTTGCAAGCCAGTAGCTC
LOC_Os05g46450
OsAffx.27340.1.S1_at--428--10571Chr05:26827186..26827210 (25 bp)
TTCTTTGCAAGCCAGTAGCTCTGCC
LOC_Os05g46450
OsAffx.27340.1.S1_at--275--10751Chr05:26827182..26827206 (25 bp)
TTGCAAGCCAGTAGCTCTGCCTGTT
LOC_Os05g46450
OsAffx.27340.1.S1_at--379--1191Chr05:26827173..26827197 (25 bp)
AGTAGCTCTGCCTGTTCCCCATGCT
LOC_Os05g46450
OsAffx.27340.1.S1_at--1141--6691Chr05:26827160..26827184 (25 bp)
GTTCCCCATGCTGCGTGGCTCAAGA
LOC_Os05g46450
OsAffx.27340.1.S1_at--728--3991Chr05:26827152..26827171 (20 bp)
CGTGGCTCAAGATCTCAAGTCTTTT
LOC_Os05g46450
OsAffx.27340.1.S1_at--569--8291NONE
GGCTCAAGATCTCAAGTCTTTTTCT
NONE
Target Sequence 
GCCGGATTCGGGTTCTCAAATCGCTTCAGAGGTGTTCTTCTTTGCAAGCCAGTAGCTCTGCCTGTTCCCCATGCTGCGTG
GCTCAAGATCTCAAGTCTTTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis