Browse Element(s) Details


OsAffx.27359.1.S1_x_at

Description tigr:9633.m04452
TID=OsAffx.27359.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4778010/11CHY zinc finger family protein, expressed
LOC_Os01g494701/11CHY zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47750OsAffx.27357.2.S1_at11/115+27270255..27272647expressed protein
LOC_Os05g47760NANA5+27273439..27274317expressed protein
LOC_Os05g47770OsAffx.27357.1.S1_at11/115+27277679..27284205Protein kinase domain containing protein, expressed
LOC_Os05g47770OsAffx.25952.1.S1_s_at1/115+27277679..27284205Protein kinase domain containing protein, expressed
LOC_Os05g47780Os.19172.1.S1_at11/115+27294266..27298959CHY zinc finger family protein, expressed
LOC_Os05g47780OsAffx.27359.1.S1_x_at10/115+27294266..27298959CHY zinc finger family protein, expressed
LOC_Os05g47790Os.47956.1.S1_at11/115+27300132..27303737expressed protein
LOC_Os05g47799NANA5+27305791..27307255NA
LOC_Os05g47810OsAffx.15139.1.S1_x_at10/115+27320305..27321335hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27359.1.S1_x_at--223--2451Chr05:27296856..27296995 (25 bp)
AAAATCTCATGACCAGCCGCTGGAT
LOC_Os05g47780
OsAffx.27359.1.S1_x_at--892--6871Chr05:27297051..27297075 (25 bp)
GTATTACCTGGATGTTGTCCTTCAT
LOC_Os05g47780
OsAffx.27359.1.S1_x_at--155--6331Chr05:27298114..27298138 (25 bp)
GATGAATTGCCCAATCTGCTGCGAC
LOC_Os05g47780
OsAffx.27359.1.S1_x_at--376--4751Chr05:27298131..27298155 (25 bp)
GCTGCGACTTCCTATTTACATCGAG
LOC_Os05g47780
OsAffx.27359.1.S1_x_at--440--2311Chr05:27298166..27298190 (25 bp)
AAAGGTCTACCTTGTGGCCATTTCA
LOC_Os05g47780
OsAffx.27359.1.S1_x_at--968--8432Chr05:27298181..27298205 (25 bp)
GGCCATTTCATGCATTCAGCTTGCT
LOC_Os05g47780
OsAffx.27359.1.S1_x_at--74--131Chr05:27298194..27298310 (25 bp)
ATTCAGCTTGCTTTCAGGCGTACAC
LOC_Os05g47780
OsAffx.27359.1.S1_x_at--396--3191Chr05:27298331..27298355 (25 bp)
CAATCTGCTCTAAATCCTTGGGAGA
LOC_Os05g47780
OsAffx.27359.1.S1_x_at--635--5651Chr05:27298524..27298544 (21 bp)
GACAGTATACTTTGGCATGCTTGAT
LOC_Os05g47780
OsAffx.27359.1.S1_x_at--511--4931Chr05:27298538..27298562 (25 bp)
GCTTGATGGCTTGCTGGCCGCAGAA
LOC_Os05g47780
OsAffx.27359.1.S1_x_at--74--8111Chr05:27298583..27299044 (25 bp)
GGACCGGTGCCAGAGCTTTCAGCTT
NONE
Target Sequence 
AAAATCTCATGACCAGCCGCTGGATAGCTGCTCAGCAGAAATCGCCCCAACCTCAGTCAGAAGATCGCAATGGATGTACA
GTATTACCTGGATGTTGTCCTTCATACCGAGATCCAGAGAATCAGATTTTTGGCTGTTTTGTCATGATAAAGTTAGTGAC
CATACAATGGAAAGAGCATAAATGTCGAGAAAAGATGCTAGAGATGAATTGCCCAATCTGCTGCGACTTCCTATTTACAT
CGAGTGCAGCAGTTAAAGGTCTACCTTGTGGCCATTTCATGCATTCAGCTTGCTTTCAGGCGTACACCTGTAGTCACTAC
ACCTGCCCAATCTGCTCTAAATCCTTGGGAGATATGACAGTATACTTTGGCATGCTTGATGGCTTGCTGGCCGCAGAAGA
GCTTCCTGAGGAATACCGGGACCGGTGCCAGAGCTTTCAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27359.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis