Browse Element(s) Details


OsAffx.27391.1.S1_x_at

Description tigr:9633.m04717
TID=OsAffx.27391.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5016011/11uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os01g455102/11uncharacterized plant-specific domain TIGR01570 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50120Os.34647.1.S1_at11/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50120Os.34984.3.S1_x_at1/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50130OsAffx.15176.1.S1_at10/115+28648050..28650974Homeobox associated leucine zipper family protein
LOC_Os05g50140OsAffx.27390.1.S1_at11/115+28652106..28654544Auxin efflux carrier component 3, putative
LOC_Os05g50150NANA5+28656100..28656375hypothetical protein
LOC_Os05g50160OsAffx.27391.1.S1_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.27391.1.S1_x_at11/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50160OsAffx.23670.1.S1_x_at2/115+28660284..28661332uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os05g50170Os.52893.1.S1_at11/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_x_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50170OsAffx.9402.1.S1_at1/115+28662017..28668390Carboxylesterase, putative, expressed
LOC_Os05g50180Os.8889.1.S1_at11/115+28674633..28675422EF hand family protein, expressed
LOC_Os05g50190Os.22907.1.S1_at11/115+28676892..28680600protein kinase, putative, expressed
LOC_Os05g50200Os.17968.1.S1_at11/115+28683779..28690832expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27391.1.S1_x_at--767--8432Chr05:28660816..28660840 (25 bp)
GGCCTTGTGCGCATCGCGCTCGAGT
LOC_Os05g50160
OsAffx.27391.1.S1_x_at--929--1971Chr05:28660701..28660725 (25 bp)
ACTGCAACGGCAAGAGCTGCGGCTA
LOC_Os05g50160
OsAffx.27391.1.S1_x_at--370--791Chr05:28660612..28660636 (25 bp)
ATGGGCGCCGGCGTCATACCCGCCG
LOC_Os05g50160
OsAffx.27391.1.S1_x_at--214--5772Chr05:28660564..28660588 (25 bp)
GACGTCATGTACATGCGCGCGCGGT
LOC_Os05g50160
OsAffx.27391.1.S1_x_at--350--8331Chr05:28660525..28660549 (25 bp)
GGCTCGCGCGACTCGGAGGCATTCT
LOC_Os05g50160
OsAffx.27391.1.S1_x_at--918--9331Chr05:28660522..28660546 (25 bp)
TCGCGCGACTCGGAGGCATTCTACA
LOC_Os05g50160
OsAffx.27391.1.S1_x_at--99--4571Chr05:28660520..28660544 (25 bp)
GCGCGACTCGGAGGCATTCTACATG
LOC_Os05g50160
OsAffx.27391.1.S1_x_at--217--711Chr05:28660498..28660522 (25 bp)
ATGATGAACCCGGACAGCACAAGCA
LOC_Os05g50160
OsAffx.27391.1.S1_x_at--234--8871Chr05:28660497..28660521 (25 bp)
TGATGAACCCGGACAGCACAAGCAC
LOC_Os05g50160
OsAffx.27391.1.S1_x_at--454--671Chr05:28660495..28660519 (25 bp)
ATGAACCCGGACAGCACAAGCACCA
LOC_Os05g50160
OsAffx.27391.1.S1_x_at--382--3411Chr05:28660469..28660493 (25 bp)
CAGCAACAGCAACAGTGGCGGTCCT
LOC_Os05g50160
Target Sequence 
GGCCTTGTGCGCATCGCGCTCGAGTGCGAGCGCGCCAAGGGCGGCCCCGCCCCCGCCCTGCCCACCGCGACGGGCGGCGG
GAAGAGGCTGCTCGAGGAGACGGTGTGGCGCGCGTACTGCAACGGCAAGAGCTGCGGCTACGCGGTGCGCCGCGAGTGCG
GCGCCGCCGACTGGCGCGTGCTGCGCGCGCTGGAGCCGGTGTCCATGGGCGCCGGCGTCATACCCGCCGCCAGCTGCGGC
GGCGGCGAGGGCGACGTCATGTACATGCGCGCGCGGTTCGAGCGGGTGGTGGGCTCGCGCGACTCGGAGGCATTCTACAT
GATGAACCCGGACAGCACAAGCACCAGCAGCAACAGCAACAGTGGCGGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27391.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis