Browse Element(s) Details


OsAffx.27396.1.S1_at

Description tigr:9633.m04784
TID=OsAffx.27396.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5079011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50770Os.54485.1.S1_at2/115+29036431..29038295C4-dicarboxylate transporter/malic acid transport family protein, putative
LOC_Os05g50770Os.5608.3.S1_x_at1/115+29036431..29038295C4-dicarboxylate transporter/malic acid transport family protein, putative
LOC_Os05g50780OsAffx.15186.1.S1_at11/115+29046079..29048554Leucine Rich Repeat family protein
LOC_Os05g50790OsAffx.27396.1.S1_at11/115+29048775..29051796hypothetical protein
LOC_Os05g50800Os.15417.1.S1_at9/115+29054191..29056893expressed protein
LOC_Os05g50810Os.12678.1.S1_at11/115+29057230..29061250Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g50820Os.8034.1.S1_at11/115+29066820..29068992expressed protein
LOC_Os05g50830Os.54914.1.S1_at11/115+29071353..29073616Protein kinase domain containing protein, expressed
LOC_Os05g50830OsAffx.27515.1.S1_x_at1/115+29071353..29073616Protein kinase domain containing protein, expressed
LOC_Os05g50840Os.12128.1.S1_at11/115+29073640..29078396Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27396.1.S1_at--238--7951Chr05:29051199..29051223 (25 bp)
GGATCGGGAAGCTCTCAAAGCTGCA
LOC_Os05g50790
OsAffx.27396.1.S1_at--770--2351Chr05:29051215..29051239 (25 bp)
AAAGCTGCAGGTGATCAAGGGATTC
LOC_Os05g50790
OsAffx.27396.1.S1_at--501--3831Chr05:29051285..29051309 (25 bp)
CTGCGCGCGCTAACGAGACGAGGCT
LOC_Os05g50790
OsAffx.27396.1.S1_at--515--1611Chr05:29051315..29051339 (25 bp)
AGCTGAGCATCGTGATAGGCCGGAC
LOC_Os05g50790
OsAffx.27396.1.S1_at--1019--651Chr05:29051447..29051471 (25 bp)
ATGCAACTGACAAGGTGGCGTTCGC
LOC_Os05g50790
OsAffx.27396.1.S1_at--953--9371Chr05:29051486..29051510 (25 bp)
TCGAGAAGCTGGACCTCCGGTGCTT
LOC_Os05g50790
OsAffx.27396.1.S1_at--1071--4511Chr05:29051553..29051577 (25 bp)
GCCGCGCCTGGAGAAGCTGTACGTT
LOC_Os05g50790
OsAffx.27396.1.S1_at--747--2891Chr05:29051629..29051653 (25 bp)
AAGGTGCTTCGGGTCAGGTTCCTCA
LOC_Os05g50790
OsAffx.27396.1.S1_at--721--931Chr05:29051653..29051677 (25 bp)
AGGCACCTCGACTATTCTTGGGAGA
LOC_Os05g50790
OsAffx.27396.1.S1_at--376--1451Chr05:29051675..29051699 (25 bp)
AGAAGCTGCACGACGCATACGGGAA
LOC_Os05g50790
OsAffx.27396.1.S1_at--141--1051Chr05:29051714..29051738 (25 bp)
AGGTGTGCGAGTGCTCCAACGTGCA
LOC_Os05g50790
Target Sequence 
GGATCGGGAAGCTCTCAAAGCTGCAGGTGATCAAGGGATTCGTGGTCGCCAACTCCAGCAGCAAGGACCCGTGCCGTCTC
AGCGAGCTGCGCGCGCTAACGAGACGAGGCTGAGGAAGCTGAGCATCGTGATAGGCCGGACGGCCAGGCCGGAGGCGGAC
GAGGTGACGGCGCTCGCGAGCCTCCCCGCGCTCCGGTCGCTGACGATGACATGGAGCGGGGTGTCACCGGCGGAGCAAGA
TGGTCGAGATGCAACTGACAAGGTGGCGTTCGCGCTCCCGTCTGAGCTCGAGAAGCTGGACCTCCGGTGCTTCCCGCTGC
CGGACTTCCCACGGTGGGCGGAGCCTCACCTGCTGCCGCGCCTGGAGAAGCTGTACGTTCGCGGCGGCATGATCACCGGC
CTCGGCGAAGGCGGCGGCGGCTCGGCGGTGAAGGTGCTTCGGGTCAGGTTCCTCAGGCACCTCGACTATTCTTGGGAGAA
GCTGCACGACGCATACGGGAAGCTTGAGATACTGGAGGTGTGCGAGTGCTCCAACGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis