Browse Element(s) Details


OsAffx.27445.2.S1_x_at

Description tigr:9634.m00167
TID=OsAffx.27445.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0261011/11hypothetical protein
LOC_Os06g037407/11Formimidoyltransferase-cyclodeaminase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02570Os.8343.1.S1_at11/116+901675..906047Syntaxin 43, putative, expressed
LOC_Os06g02580Os.32113.1.S1_at11/116+907638..909323high-affinity nickel-transport family protein, putative, expressed
LOC_Os06g02590Os.52636.1.S1_at4/116+912780..920283START domain-containing protein, putative, expressed
LOC_Os06g02600Os.5273.2.S1_x_at10/116+921217..924267DAG protein, chloroplast precursor, putative, expressed
LOC_Os06g02610OsAffx.27445.2.S1_x_at11/116+924433..925154hypothetical protein
LOC_Os06g02610OsAffx.27445.1.S1_x_at4/116+924433..925154hypothetical protein
LOC_Os06g02620Os.44821.1.A1_x_at10/116+926340..931584DnaJ C terminal region family protein, expressed
LOC_Os06g02620Os.7738.1.S1_at8/116+926340..931584DnaJ C terminal region family protein, expressed
LOC_Os06g02630Os.32596.1.S1_x_at11/116+932239..935006expressed protein
LOC_Os06g02630OsAffx.27427.1.S1_at1/116+932239..935006expressed protein
LOC_Os06g02640OsAffx.27423.1.S1_at11/116+936167..939109hypothetical protein
LOC_Os06g02650Os.39915.1.A1_s_at11/116+940733..945388expressed protein
LOC_Os06g02650OsAffx.8785.1.S1_at2/116+940733..945388expressed protein
LOC_Os06g02650Os.32597.1.S1_x_at1/116+940733..945388expressed protein
LOC_Os06g02660OsAffx.27424.1.S1_at11/116+946958..948607hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27445.2.S1_x_at--1118--2692Chr06:1475273..1475297 (25 bp)
AAGCTCTACATCTCCGAGAGCCGCA
LOC_Os06g03740
OsAffx.27445.2.S1_x_at--644--412Chr06:1475773..1475797 (25 bp)
ATCAGGAGGCAGCTCGGCTACTTCA
LOC_Os06g03740
OsAffx.27445.2.S1_x_at--962--8252Chr06:1475780..1475804 (25 bp)
GGCAGCTCGGCTACTTCAAGCCCAA
LOC_Os06g03740
OsAffx.27445.2.S1_x_at--148--8432Chr10:17005107..17005149 (25 bp)
GGCCGGAGAGGTCGCCGAGATCCAA
NONE
OsAffx.27445.2.S1_x_at--916--1731Chr06:924729..924753 (25 bp)
ACCGGCTGGGTCGACAACTACAACG
LOC_Os06g02610
OsAffx.27445.2.S1_x_at--192--7712Chr06:1475924..1475948 (25 bp)
GGGTCGACAACTACAACGTGCCCGT
LOC_Os06g03740
OsAffx.27445.2.S1_x_at--652--4652Chr06:1476053..1476077 (25 bp)
GCGTCGTGGAGGTCGCCTGCAACCT
LOC_Os06g03740
OsAffx.27445.2.S1_x_at--700--8552Chr06:1476059..1476083 (25 bp)
TGGAGGTCGCCTGCAACCTGCTCGA
LOC_Os06g03740
OsAffx.27445.2.S1_x_at--429--3772Chr06:1476148..1476172 (25 bp)
CTCTCCGTCGGCAAGGGATATTTCA
LOC_Os06g03740
OsAffx.27445.2.S1_x_at--257--8231Chr06:924489..924513 (25 bp)
GGCAAGGGATATTTCACTGATTATT
LOC_Os06g02610
OsAffx.27445.2.S1_x_at--17--10331Chr06:924469..924493 (25 bp)
TTATTCGCAGGATAAAATCGTCGAG
LOC_Os06g02610
Target Sequence 
AAGCTCTACATCTCCGAGAGCCGCAACGCCGCCGCCCTGCGCGCCATCGAGCAGGCGGCGTGCGGCGGCGGCGCCGTCGT
CGTCAACCGCTTCACCGACGACGCCTACAACCGGGGGAGGACGCTGGCCTCCATCAGGAGGCAGCTCGGCTACTTCAAGC
CCAACTCCTCCGGCGACCAATGGCGGGGAGCGCCGGAGACGGACGCCCTGCCCGTCGCACCGGACGCCGGGCCGGAGAGG
TCGCCGAGATCCAAGGGCGTGGTGGTCGTCGGCGCCACCGGCTGGGTCGACAACTACAACGTGCCCGTCCGCACCGGCGA
CGTGGAGGCGGCGAGGCGGATCGCCCGCGCCGTCAGCGAGCGCGGCGGCGGGCTCCCGTCCGTGCAGGCGATGGGGCTCG
CGCACGGCGGCGGCGTCGTGGAGGTCGCCTGCAACCTGCTCGACCCGGCGAGGGTCGGGGCCGAGCAGGTGCAGGGCATG
GTGGAGCGGCTCGCCGCCGGCGAGGGCCTCTCCGTCGGCAAGGGATATTTCACTGATTATTCGCAGGATAAAATCGTCGA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27445.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis