Browse Element(s) Details

OsAffx.27457.1.S1_at

Description

tigr:9634.m00385
TID=OsAffx.27457.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY063985 putative CCR4-associated factor
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04670	11/11	CAF1 family ribonuclease containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04610	Os.5449.1.S2_at	11/11	6	+	2008997..2014660	ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04610	Os.5449.1.S1_at	11/11	6	+	2008997..2014660	ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04620	Os.49218.1.S1_at	11/11	6	+	2016779..2018352	GDP-mannose 4,6 dehydratase 1, putative, expressed
LOC_Os06g04630	OsAffx.15264.1.S1_at	11/11	6	+	2020817..2021420	hypothetical protein
LOC_Os06g04640	Os.11713.2.S1_x_at	11/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04640	Os.11713.2.S1_at	11/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04640	Os.11713.1.S1_x_at	5/11	6	+	2022358..2027120	DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os06g04650	Os.6734.1.S1_at	11/11	6	+	2027123..2029229	Peptide methionine sulfoxide reductase family protein, expressed
LOC_Os06g04660	Os.11678.1.S1_at	11/11	6	+	2029470..2033811	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g04660	Os.11678.2.S1_at	9/11	6	+	2029470..2033811	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g04670	OsAffx.27457.1.S1_at	11/11	6	+	2035772..2036779	CAF1 family ribonuclease containing protein, expressed
LOC_Os06g04670	OsAffx.27457.1.S1_x_at	11/11	6	+	2035772..2036779	CAF1 family ribonuclease containing protein, expressed
LOC_Os06g04680	Os.49667.1.S1_at	10/11	6	+	2038752..2040428	expressed protein
LOC_Os06g04690	Os.3577.2.S1_at	11/11	6	+	2042458..2047358	F-box domain containing protein, expressed
LOC_Os06g04690	Os.3577.1.S1_x_at	9/11	6	+	2042458..2047358	F-box domain containing protein, expressed
LOC_Os06g04699	Os.7474.1.S1_at	11/11	6	+	2049319..2050708	expressed protein
LOC_Os06g04710	Os.3577.2.S1_at	11/11	6	+	2056222..2061224	expressed protein
LOC_Os06g04710	Os.3577.1.S1_x_at	9/11	6	+	2056222..2061224	expressed protein
LOC_Os06g04710	OsAffx.28618.1.S1_at	1/11	6	+	2056222..2061224	expressed protein
LOC_Os06g04722	OsAffx.4722.1.S1_at	11/11	6	+	2061556..2062050	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0009451	biological_process	RNA modification
GO:0004540	molecular_function	ribonuclease activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27457.1.S1_at--405--447	1	Chr06:2036384..2036408 (25 bp)	GCCTGCGGCCGCCTGACGTGGGCGG	LOC_Os06g04670
OsAffx.27457.1.S1_at--980--1063	1	Chr06:2036429..2036453 (25 bp)	TTCGCCTACCTCGTCAAGGTGCTCA	LOC_Os06g04670
OsAffx.27457.1.S1_at--1128--407	1	Chr06:2036472..2036496 (25 bp)	CGAGCACCCTGGAAGGGTTCATGGC	LOC_Os06g04670
OsAffx.27457.1.S1_at--10--139	1	Chr06:2036474..2036498 (25 bp)	AGCACCCTGGAAGGGTTCATGGCGA	LOC_Os06g04670
OsAffx.27457.1.S1_at--861--335	1	Chr06:2036476..2036500 (25 bp)	CACCCTGGAAGGGTTCATGGCGAAG	LOC_Os06g04670
OsAffx.27457.1.S1_at--833--789	1	Chr06:2036487..2036511 (25 bp)	GGTTCATGGCGAAGGTCAGCAAGAT	LOC_Os06g04670
OsAffx.27457.1.S1_at--143--963	1	Chr06:2036490..2036514 (25 bp)	TCATGGCGAAGGTCAGCAAGATATT	LOC_Os06g04670
OsAffx.27457.1.S1_at--44--531	1	Chr06:2036497..2036521 (25 bp)	GAAGGTCAGCAAGATATTCGGGCCG	LOC_Os06g04670
OsAffx.27457.1.S1_at--834--101	1	Chr06:2036499..2036523 (25 bp)	AGGTCAGCAAGATATTCGGGCCGGC	LOC_Os06g04670
OsAffx.27457.1.S1_at--569--965	1	Chr06:2036502..2036526 (25 bp)	TCAGCAAGATATTCGGGCCGGCGGT	LOC_Os06g04670
OsAffx.27457.1.S1_at--218--273	1	Chr06:2036537..2036561 (25 bp)	AAGCACCTCGCCAAGTTCTGCGGCG	LOC_Os06g04670

Target Sequence

GCCTGCGGCCGCCTGACGTGGGCGGCGTTCTCGGGCTCCTACGACTTCGCCTACCTCGTCAAGGTGCTCACCGGCGGCCG
GCCGCTGCCGAGCACCCTGGAAGGGTTCATGGCGAAGGTCAGCAAGATATTCGGGCCGGCGGTGCTCGACGTGAAGCACC
TCGCCAAGTTCTGCGGCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis