Browse Element(s) Details


OsAffx.27470.1.S1_at

Description tigr:9634.m00559
TID=OsAffx.27470.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0631011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06280Os.11577.1.S1_a_at11/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06280OsAffx.8676.1.S1_at1/116+2901284..2906303galactosyltransferase family protein, putative, expressed
LOC_Os06g06290Os.12029.1.S1_a_at10/116+2907034..2909907GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g06300Os.15230.1.S1_at11/116+2925824..2927475TWIN SISTER of FT protein, putative, expressed
LOC_Os06g06300Os.49478.1.S1_at1/116+2925824..2927475TWIN SISTER of FT protein, putative, expressed
LOC_Os06g06310OsAffx.27470.1.S1_at11/116+2928391..2930982hypothetical protein
LOC_Os06g06320Os.13026.1.S1_at11/116+2939005..2941453FLOWERING LOCUS T protein, putative, expressed
LOC_Os06g06320Os.15230.1.S1_at1/116+2939005..2941453FLOWERING LOCUS T protein, putative, expressed
LOC_Os06g06330Os.50507.1.S1_at11/116+2944576..2945332expressed protein
LOC_Os06g06340NANA6+2946712..2947192Protease inhibitor/seed storage/LTP family protein
LOC_Os06g06350Os.51669.1.S1_at7/116+2951884..2956630AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27470.1.S1_at--1096--5131Chr06:2930391..2930415 (25 bp)
GCAAAATGCCTTTCCTGATAGTGTG
LOC_Os06g06310
OsAffx.27470.1.S1_at--943--7571Chr06:2930417..2930441 (25 bp)
GGGCGGACATGAAACCATTGCTGCA
LOC_Os06g06310
OsAffx.27470.1.S1_at--626--9831Chr06:2930469..2930493 (25 bp)
TAAACTATACTCTTGGCCTGCTTCT
LOC_Os06g06310
OsAffx.27470.1.S1_at--169--10691Chr06:2930563..2930587 (25 bp)
TTCCAGTTCACTATCTCCACAGAGA
LOC_Os06g06310
OsAffx.27470.1.S1_at--296--2371Chr06:2930623..2930647 (25 bp)
AAACCTACGCTTTGCATGAGTATCA
LOC_Os06g06310
OsAffx.27470.1.S1_at--861--6071Chr06:2930640..2930664 (25 bp)
GAGTATCAAGCTACCTGACTGCAGT
LOC_Os06g06310
OsAffx.27470.1.S1_at--1008--5211Chr06:2930703..2930727 (25 bp)
GAATTTTGTGCCTCATTTGCACCAG
LOC_Os06g06310
OsAffx.27470.1.S1_at--1009--3751Chr06:2930714..2930738 (25 bp)
CTCATTTGCACCAGCTTGAGGGCAA
LOC_Os06g06310
OsAffx.27470.1.S1_at--134--2112Chr06:2930775..2930799 (25 bp)
ACATGGACTTCACAGTGGGCCGGAT
LOC_Os06g06310
OsAffx.27470.1.S1_at--354--7592Chr06:2930820..2930844 (25 bp)
GGGCTTGGCCCAGGAGCAAGTCATC
LOC_Os06g06310
OsAffx.27470.1.S1_at--32--10411Chr06:2930892..2930916 (25 bp)
TTTTGAACCAATGGTTGCGGCCTCC
LOC_Os06g06310
Target Sequence 
GCAAAATGCCTTTCCTGATAGTGTGAGGGCGGACATGAAACCATTGCTGCAGATCATGGCTTTAATGACAAAGTTAATTA
AACTATACTCTTGGCCTGCTTCTGGAAGATGGGGAGATCAAGTACTAAATCAAGTTCATGAATTGTGCAAGTGCAGTCAA
GATCAGAGCCTATTCCAGTTCACTATCTCCACAGAGATGAAGATGACATGGCTTGGGGATCTTGAGACTATCAAACCTAC
GCTTTGCATGAGTATCAAGCTACCTGACTGCAGTTTTGGAAGAATGGAGTTGCCATGGGATCCTGGGGGCATGAATTTTG
TGCCTCATTTGCACCAGCTTGAGGGCAAGCTGATTTTCAAGGGGAGAGGAATGTCATGTGCTGGACATGGACTTCACAGT
GGGCCGGATGTGGGTTGTCATAGGAAAGGGGGCTTGGCCCAGGAGCAAGTCATCCAGAGTATAAGTACACACTCCAACAA
GAGAAAGGGGGCAATGAATTATTTTGAACCAATGGTTGCGGCCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis