Browse Element(s) Details


OsAffx.27477.3.S1_s_at

Description tigr:9634.m00600
TID=OsAffx.27477.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0670011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06610Os.4355.1.S1_at9/116+3110550..3114194expressed protein
LOC_Os06g06620OsAffx.4742.2.S1_s_at11/116+3114722..3115027hypothetical protein
LOC_Os06g06620OsAffx.4742.1.S1_x_at9/116+3114722..3115027hypothetical protein
LOC_Os06g06630NANA6+3117179..3118435hypothetical protein
LOC_Os06g06640NANA6+3118930..3119280hypothetical protein
LOC_Os06g06650NANA6+3120706..3121721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g06660Os.36001.1.S1_at11/116+3127080..3129960expressed protein
LOC_Os06g06670Os.32061.2.S1_x_at11/116+3130222..3133227expressed protein
LOC_Os06g06670Os.32061.1.S1_at10/116+3130222..3133227expressed protein
LOC_Os06g06680OsAffx.15289.1.S1_at11/116+3134632..3135975expressed protein
LOC_Os06g06690OsAffx.27477.1.S1_at8/116+3138201..3138653hypothetical protein
LOC_Os06g06700OsAffx.27477.3.S1_at11/116+3138824..3139219hypothetical protein
LOC_Os06g06700OsAffx.27477.3.S1_s_at11/116+3138824..3139219hypothetical protein
LOC_Os06g06710OsAffx.27478.1.S1_at11/116+3141027..3142989hypothetical protein
LOC_Os06g06710OsAffx.15289.1.S1_at1/116+3141027..3142989hypothetical protein
LOC_Os06g06720Os.4365.1.S1_at11/116+3144478..3146612oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g06730Os.47447.1.S1_at11/116+3153275..3157429early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06730OsAffx.10342.1.S1_x_at2/116+3153275..3157429early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06740OsAffx.27479.1.S1_at11/116+3159101..3161401Myb-like DNA-binding domain containing protein
LOC_Os06g06750Os.4367.1.S1_at11/116+3161815..3168414Agamous-like MADS box protein AGL9 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27477.3.S1_s_at--108--8371Chr06:3139163..3139187 (25 bp)
GGCGGTGCAGGTGTCCGAGTTGGCA
LOC_Os06g06700
OsAffx.27477.3.S1_s_at--864--6051Chr06:3139147..3139171 (25 bp)
GAGTTGGCAGATGATCCGGAGCCCA
LOC_Os06g06700
OsAffx.27477.3.S1_s_at--303--1311Chr06:3139139..3139163 (25 bp)
AGATGATCCGGAGCCCAGATGCATG
LOC_Os06g06700
OsAffx.27477.3.S1_s_at--21--3951Chr06:3139131..3139155 (25 bp)
CGGAGCCCAGATGCATGAGCCTAGA
LOC_Os06g06700
OsAffx.27477.3.S1_s_at--692--6331Chr06:3139122..3139146 (25 bp)
GATGCATGAGCCTAGAGGAGACCAA
LOC_Os06g06700
OsAffx.27477.3.S1_s_at--90--6011Chr06:3139105..3139129 (25 bp)
GAGACCAAGCAGCTGATCGGCTACA
LOC_Os06g06700
OsAffx.27477.3.S1_s_at--420--3231Chr06:3139100..3139124 (25 bp)
CAAGCAGCTGATCGGCTACATGAAC
LOC_Os06g06700
OsAffx.27477.3.S1_s_at--820--8311Chr06:3139087..3139111 (25 bp)
GGCTACATGAACACCATCGTCGACT
LOC_Os06g06700
OsAffx.27477.3.S1_s_at--887--3511Chr06:3139082..3139106 (25 bp)
CATGAACACCATCGTCGACTCGCTG
LOC_Os06g06700
OsAffx.27477.3.S1_s_at--870--4671Chr06:3138970..3138994 (25 bp)
GCGGTCCGCCGCTCGTTGGATCAGA
LOC_Os06g06700
OsAffx.27477.3.S1_s_at--607--1271Chr06:3138948..3138972 (25 bp)
AGATACGCAGGGACCTCGACGCCGA
LOC_Os06g06700
Target Sequence 
GGCGGTGCAGGTGTCCGAGTTGGCAGATGATCCGGAGCCCAGATGCATGAGCCTAGAGGAGACCAAGCAGCTGATCGGCT
ACATGAACACCATCGTCGACTCGCTGCTCAAGATCGTCGACTCCGGCTACTCGCCGTACCCCGTCGAGGAGATCCACGAG
ATTATCCGCGACATCCGGGAGGAGGGATGCGCCGCGGTCCGCCGCTCGTTGGATCAGATACGCAGGGACCTCGACGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27477.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis