Browse Element(s) Details


OsAffx.27481.1.S1_at

Description tigr:9634.m00623
TID=OsAffx.27481.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0691011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06870OsAffx.15291.1.S1_s_at11/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870Os.12448.1.S1_at10/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870OsAffx.15291.1.S1_at9/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06870Os.56258.1.S1_at1/116+3249505..3260365MIZ zinc finger family protein, expressed
LOC_Os06g06880Os.19570.1.S1_at11/116+3263020..3266305Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06880Os.50260.2.A1_x_at1/116+3263020..3266305Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os06g06890OsAffx.15292.1.S1_at11/116+3269078..3269750hypothetical protein
LOC_Os06g06890OsAffx.26473.1.S1_at1/116+3269078..3269750hypothetical protein
LOC_Os06g06900OsAffx.27480.1.S1_at11/116+3272407..3274876Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g06900Os.23257.1.A1_at1/116+3272407..3274876Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g06910OsAffx.27481.1.S1_at11/116+3276864..3277976expressed protein
LOC_Os06g06920NANA6+3280883..3284653D-mannose binding lectin family protein, expressed
LOC_Os06g06930NANA6+3285676..3288132D-mannose binding lectin family protein
LOC_Os06g06940OsAffx.27482.1.S1_at11/116+3293198..3295173S-locus-like receptor protein kinase, putative
LOC_Os06g06950OsAffx.4746.1.S1_x_at11/116+3300365..3302146hypothetical protein
LOC_Os06g06950OsAffx.4746.1.S1_at11/116+3300365..3302146hypothetical protein
LOC_Os06g06950OsAffx.22457.1.A1_x_at1/116+3300365..3302146hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27481.1.S1_at--1105--4591Chr06:3277480..3277504 (25 bp)
GCGACCGCACCGATCTCGAGGTGCT
LOC_Os06g06910
OsAffx.27481.1.S1_at--843--5311Chr06:3277541..3277565 (25 bp)
GAAGGTGCTCGACCACGGCCAGTAC
LOC_Os06g06910
OsAffx.27481.1.S1_at--22--1871Chr06:3277669..3277693 (25 bp)
ACGACGCAACGTGCCGCAAGGCGAG
LOC_Os06g06910
OsAffx.27481.1.S1_at--222--9331Chr06:3277733..3277757 (25 bp)
TCGCCTCCGTGACGAGGAGAGCCCT
LOC_Os06g06910
OsAffx.27481.1.S1_at--708--4651Chr06:3277770..3277794 (25 bp)
GCGTGCATCGGGACATGCGCAATGC
LOC_Os06g06910
OsAffx.27481.1.S1_at--544--611Chr06:3277784..3277808 (25 bp)
ATGCGCAATGCTCCACAACGTGTTG
LOC_Os06g06910
OsAffx.27481.1.S1_at--398--4371Chr06:3277796..3277820 (25 bp)
CCACAACGTGTTGCTCGCGAGAGAG
LOC_Os06g06910
OsAffx.27481.1.S1_at--1096--9331Chr06:3277810..3277834 (25 bp)
TCGCGAGAGAGGACCACTCGGCGTT
LOC_Os06g06910
OsAffx.27481.1.S1_at--758--4211Chr06:3277894..3277918 (25 bp)
CCGCCGGAGTGGAAGATCTCGAGAT
LOC_Os06g06910
OsAffx.27481.1.S1_at--180--471Chr06:3277909..3277933 (25 bp)
ATCTCGAGATCCATAGGCGCGCATC
LOC_Os06g06910
OsAffx.27481.1.S1_at--213--4331Chr06:3277919..3277943 (25 bp)
CCATAGGCGCGCATCGGCGTTTCGG
LOC_Os06g06910
Target Sequence 
GCGACCGCACCGATCTCGAGGTGCTCAAGCTCTCGTCCCTGTACCAGGAGCTGGAGCAGGGGAAGGTGCTCGACCACGGC
CAGTACCTCGCCGGTGACGGCGACGGGTACCCTCTTCTCCCCTGGCTCATGGTGCCGTTCCGGGGGCCAGCGGTGCCCGG
CTCGCCGGAGGCGGAGTTCAACGCCGCGCACGACGCAACGTGCCGCAAGGCGAGGCGCACGGTCCGGAGCCTGAAGGGAT
GGGGCGCCATCGCTCGCCTCCGTGACGAGGAGAGCCCTCGCGCCGCCGTGGCGTGCATCGGGACATGCGCAATGCTCCAC
AACGTGTTGCTCGCGAGAGAGGACCACTCGGCGTTGGCGCCGGAGGAGACCGACTTGCCGCCGGCGGTGCAGCGCCGGGC
GGACGACGGCGACGCCGCCGGAGTGGAAGATCTCGAGATCCATAGGCGCGCATCGGCGTTTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis