Browse Element(s) Details


OsAffx.27488.1.S1_at

Description tigr:9634.m00660
TID=OsAffx.27488.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 133549 beta-tubulin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0728011/11Tubulin beta-1 chain, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07230Os.9247.2.S1_x_at11/116+3459182..3464374Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07230Os.9247.1.S1_at9/116+3459182..3464374Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07240NANA6+3467971..3468919expressed protein
LOC_Os06g07250Os.22995.1.S1_at1/116+3469796..3474964Protein GOS9, putative, expressed
LOC_Os06g07260OsAffx.4749.1.S1_x_at11/116+3476114..3476404wall-associated kinase, putative
LOC_Os06g07260OsAffx.4749.1.S1_at11/116+3476114..3476404wall-associated kinase, putative
LOC_Os06g07270OsAffx.27487.1.S1_at10/116+3482626..3483957hypothetical protein
LOC_Os06g07270OsAffx.16226.1.S1_at4/116+3482626..3483957hypothetical protein
LOC_Os06g07280OsAffx.27488.1.S1_at11/116+3488967..3489803Tubulin beta-1 chain, putative
LOC_Os06g07290NANA6+3493534..3499016retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g07300Os.22995.1.S1_at5/116+3503058..3507741Protein GOS9, putative
LOC_Os06g07300Os.11426.2.S1_x_at1/116+3503058..3507741Protein GOS9, putative
LOC_Os06g07320NANA6+3508676..3513721retrotransposon protein, putative, unclassified
LOC_Os06g07330OsAffx.15296.1.S1_at11/116+3514131..3519690transposon protein, putative, Mutator sub-class
LOC_Os06g07330OsAffx.4918.1.S1_at2/116+3514131..3519690transposon protein, putative, Mutator sub-class
LOC_Os06g07330OsAffx.4749.1.S1_x_at1/116+3514131..3519690transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0009409biological_processresponse to cold
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0045298cellular_componenttubulin
GO:0005198molecular_functionstructural molecule activity
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27488.1.S1_at--450--10431Chr06:3488998..3489327 (25 bp)
TTATCTGTCAGTTGGCAGGAGCAAC
LOC_Os06g07280
OsAffx.27488.1.S1_at--1037--5911Chr06:3489321..3489345 (25 bp)
GAGCAACTGGTTTTAGCATGGGTAC
LOC_Os06g07280
OsAffx.27488.1.S1_at--240--8591Chr06:3489328..3489352 (25 bp)
TGGTTTTAGCATGGGTACCCTGCTC
LOC_Os06g07280
OsAffx.27488.1.S1_at--1014--6331Chr06:3489388..3489412 (25 bp)
GATGCTGACATTCTCTGAGAAGTTT
LOC_Os06g07280
OsAffx.27488.1.S1_at--414--3751Chr06:3489417..3489441 (25 bp)
CTCACCAGAGGTTTCTGATACACTA
LOC_Os06g07280
OsAffx.27488.1.S1_at--285--6151Chr06:3489424..3489448 (25 bp)
GAGGTTTCTGATACACTATGGTGGA
LOC_Os06g07280
OsAffx.27488.1.S1_at--73--3871Chr06:3489431..3489455 (25 bp)
CTGATACACTATGGTGGAGCAGCAC
LOC_Os06g07280
OsAffx.27488.1.S1_at--641--7731Chr06:3489443..3489467 (25 bp)
GGTGGAGCAGCACACTATCTGTCCA
LOC_Os06g07280
OsAffx.27488.1.S1_at--258--4931Chr06:3489471..3489495 (25 bp)
GCTTGTTGAGACTTGAGAACGCTAT
LOC_Os06g07280
OsAffx.27488.1.S1_at--554--5451Chr06:3489487..3489511 (25 bp)
GAACGCTATTGAGTGCATGGTCATA
LOC_Os06g07280
OsAffx.27488.1.S1_at--966--7811Chr06:3489505..3489737 (25 bp)
GGTCATAATGATTGGTGATCTGAAC
LOC_Os06g07280
Target Sequence 
TTATCTGTCAGTTGGCAGGAGCAACTGGTTTTAGCATGGGTACCCTGCTCATCTCAAAGATCAGGGAGGAGTACCCAGAC
AGGATGATGCTGACATTCTCTGAGAAGTTTTCCCCTCACCAGAGGTTTCTGATACACTATGGTGGAGCAGCACACTATCT
GTCCATCAGCTTGTTGAGACTTGAGAACGCTATTGAGTGCATGGTCATAATGATTGGTGATCTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis