Browse Element(s) Details


OsAffx.27546.1.S1_x_at

Description tigr:9634.m00997
TID=OsAffx.27546.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g102408/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10210Os.6376.1.S1_at11/116+5226417..5230613expressed protein
LOC_Os06g10220OsAffx.4786.1.S1_at11/116+5236898..5239270hypothetical protein
LOC_Os06g10230Os.11476.1.S1_at11/116+5243152..5250844Leucine Rich Repeat family protein, expressed
LOC_Os06g10230OsAffx.10959.1.S1_at1/116+5243152..5250844Leucine Rich Repeat family protein, expressed
LOC_Os06g10240OsAffx.27546.1.S1_at10/116+5252679..5253095hypothetical protein
LOC_Os06g10240OsAffx.27546.1.S1_x_at8/116+5252679..5253095hypothetical protein
LOC_Os06g10250OsAffx.15349.1.S1_at10/116+5257956..5260613hypothetical protein
LOC_Os06g10260OsAffx.15350.1.S1_at11/116+5263604..5264959hypothetical protein
LOC_Os06g10269NANA6+5270723..5271311NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27546.1.S1_x_at--531--931NONE
AGGAGACCAAGGTGGCGATGCGGGC
NONE
OsAffx.27546.1.S1_x_at--1018--4191Chr06:5252669..5252693 (25 bp)
CCCGTCGCAAATGGCGTCGAGGATA
NONE
OsAffx.27546.1.S1_x_at--1076--2951Chr06:5252678..5252702 (25 bp)
AATGGCGTCGAGGATAGCGACGACA
NONE
OsAffx.27546.1.S1_x_at--206--4551Chr06:5252773..5252797 (25 bp)
GCCCTCTCCTGCAGATGGCGTCGAG
LOC_Os06g10240
OsAffx.27546.1.S1_x_at--1092--7191Chr06:5252792..5252816 (25 bp)
GTCGAGGATGGTGGCTCCCGAACCT
LOC_Os06g10240
OsAffx.27546.1.S1_x_at--430--991Chr06:5252796..5252820 (25 bp)
AGGATGGTGGCTCCCGAACCTCCTG
LOC_Os06g10240
OsAffx.27546.1.S1_x_at--1136--4092Chr06:5253146..5253170 (25 bp)
CGAACCTCCTGTCGTGAATAGCGTT
NONE
OsAffx.27546.1.S1_x_at--474--1752Chr06:5253149..5253173 (25 bp)
ACCTCCTGTCGTGAATAGCGTTCAG
NONE
OsAffx.27546.1.S1_x_at--1053--291Chr06:5252827..5252851 (25 bp)
ATAGCGTTCAGGACGGTGTTGGCTC
LOC_Os06g10240
OsAffx.27546.1.S1_x_at--762--4012Chr06:5252831..5252855 (25 bp)
CGTTCAGGACGGTGTTGGCTCCCGA
LOC_Os06g10240
OsAffx.27546.1.S1_x_at--1019--4191Chr06:5253005..5253029 (25 bp)
CCCGTCGCAAATGGCGTCGAGGACA
LOC_Os06g10240
Target Sequence 
AGGAGACCAAGGTGGCGATGCGGGCGGCGGCCCCCGAGCCCTCCCGTCGCAAATGGCGTCGAGGATAGCGACGACAGTGG
CGGCGGCGGCTCCGGAGCCCTCCCGTCACGGATGGGGTCGAGGACAGCGATGGCGGTGGCTCCCGAGCCCTCTCCTGCAG
ATGGCGTCGAGGATGGTGGCTCCCGAACCTCCTGTCGTGAATAGCGTTCAGGACGGTGTTGGCTCCCGAGCCCTCCCGCG
TCGGATGGCTCGGCGGCGGTGGCTCCCGAACCCTCCCGCGCGGATGGTGTCGAGGGAGGCGGCGGCGGTTCCCGAGCCCT
CTCTCGCGGATGGCGTCGAGGACGAAGGTGGCGATGCTGGCGGCGTCCCCCGAGCCCTCCCGTCGCAAATGGCGTCGAGG
ACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27546.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis