Browse Element(s) Details


OsAffx.27593.2.S1_x_at

Description tigr:9634.m01274
TID=OsAffx.27593.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1285011/11hypothetical protein
LOC_Os06g128402/11hypothetical protein
LOC_Os06g128601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12820Os.51692.1.S1_at10/116+7004873..7007331expressed protein
LOC_Os06g12830Os.53094.1.S1_at11/116+7018835..7021062expressed protein
LOC_Os06g12840OsAffx.27593.1.S1_x_at11/116+7024604..7026003hypothetical protein
LOC_Os06g12840OsAffx.27593.1.S1_at11/116+7024604..7026003hypothetical protein
LOC_Os06g12840OsAffx.27593.2.S1_x_at2/116+7024604..7026003hypothetical protein
LOC_Os06g12850OsAffx.27593.2.S1_x_at11/116+7030414..7031805hypothetical protein
LOC_Os06g12850OsAffx.27593.1.S1_x_at1/116+7030414..7031805hypothetical protein
LOC_Os06g12860OsAffx.27593.4.S1_at11/116+7036049..7037407hypothetical protein
LOC_Os06g12860OsAffx.27593.2.S1_x_at1/116+7036049..7037407hypothetical protein
LOC_Os06g12860OsAffx.27593.1.S1_x_at1/116+7036049..7037407hypothetical protein
LOC_Os06g12870Os.27436.1.A1_s_at11/116+7042612..7044658expressed protein
LOC_Os06g12870Os.27436.2.S1_s_at11/116+7042612..7044658expressed protein
LOC_Os06g12876Os.24311.1.A1_at9/116+7046261..7051935expressed protein
LOC_Os06g12882Os.49387.1.S1_at11/116+7052690..7055205Zinc finger protein 291, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27593.2.S1_x_at--72--9915Chr11:20710024..20710398 (25 bp)
TACTACCACCACAACGGCGGCGAGG
NONE
OsAffx.27593.2.S1_x_at--641--5891Chr06:7030884..7030908 (25 bp)
GAGCTCAACCACACCGAGATCGGAT
LOC_Os06g12850
OsAffx.27593.2.S1_x_at--939--6031Chr06:7030869..7030893 (25 bp)
GAGATCGGATTCTTCTCGCCGTACC
LOC_Os06g12850
OsAffx.27593.2.S1_x_at--70--9971Chr06:7030848..7030872 (25 bp)
TACCGCGAGGCCATCCGGATGTCGC
LOC_Os06g12850
OsAffx.27593.2.S1_x_at--254--891Chr06:7030841..7030865 (25 bp)
AGGCCATCCGGATGTCGCTCGAGCG
LOC_Os06g12850
OsAffx.27593.2.S1_x_at--949--1771Chr06:7030779..7030803 (25 bp)
ACCGTGGTGGTGACCACGTTCTCGC
LOC_Os06g12850
OsAffx.27593.2.S1_x_at--969--3311Chr06:7030749..7030773 (25 bp)
CACTTCGAGAAGGAGTGGGACGACC
LOC_Os06g12850
OsAffx.27593.2.S1_x_at--967--1591Chr06:7030658..7030682 (25 bp)
AGCTCCGGAGCATCGCCATCGAGGA
LOC_Os06g12850
OsAffx.27593.2.S1_x_at--704--7713Chr06:7036164..7036188 (25 bp)
GGGTGTACATGCACCGCGACCCGTT
LOC_Os06g12860
OsAffx.27593.2.S1_x_at--650--5891Chr06:7030491..7030515 (25 bp)
GAGCGGCTGCAGAGCGACTGCCTCC
LOC_Os06g12850
OsAffx.27593.2.S1_x_at--1098--8132Chr06:7030444..7030468 (25 bp)
GGACACGTTCAATGAGATCTTGCTG
LOC_Os06g12850
Target Sequence 
TACTACCACCACAACGGCGGCGAGGTGCTCGGCGTGCACAACCTCCCGGAGCTCAACCACACCGAGATCGGATTCTTCTC
GCCGTACCGCGAGGCCATCCGGATGTCGCTCGAGCGCCTCCTCGGCTTAGCCGCCGCCGGCCGCCGCGGCCGCACCGTGG
TGGTGACCACGTTCTCGCCGGCGCACTTCGAGAAGGAGTGGGACGACCCCGCGACGTGCGCGAGGACGCGGCCGTACGAG
GACGGGGAGAAGGAGGTGGGAGGCATCGAGGGGGAGCTCCGGAGCATCGCCATCGAGGAGGCGGCGGGGGCGGCGGCGGC
GGCGGCGGCGGCGGCGAGGAGCAGGGTGGAGGTGCTCGACGTGACGAGGCTGGCGACGATGCGGCCGGACGGGCACCCGG
GGGTGTACATGCACCGCGACCCGTTCGCGCGCGGCGTGCCGGAGCGGCTGCAGAGCGACTGCCTCCACTTCTGCTTGCCC
GGGCCGGTGGACACGTTCAATGAGATCTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27593.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis