CREP Browser

OsAffx.27603.1.S1_at

Description

tigr:9634.m01304
TID=OsAffx.27603.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g13150	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g13110	OsAffx.27658.1.S1_at	8/11	6	+	7195592..7200418	retrotransposon protein, putative, unclassified
LOC_Os06g13120	OsAffx.15403.1.S1_at	11/11	6	+	7200592..7202995	hypothetical protein
LOC_Os06g13130	NA	NA	6	+	7204228..7204818	hypothetical protein
LOC_Os06g13140	OsAffx.27602.1.S1_at	10/11	6	+	7208517..7211491	transducin family protein, putative, expressed
LOC_Os06g13150	OsAffx.27603.1.S1_at	11/11	6	+	7215474..7216002	hypothetical protein
LOC_Os06g13160	Os.54594.1.S1_at	11/11	6	+	7217854..7219284	Plant viral-response family protein, expressed
LOC_Os06g13170	Os.53308.1.A1_at	7/11	6	+	7220866..7223018	methyltransferase GidB family protein
LOC_Os06g13180	OsAffx.27604.1.S1_x_at	11/11	6	+	7223985..7225100	Matrixin family protein, expressed
LOC_Os06g13190	OsAffx.27605.1.S1_s_at	11/11	6	+	7229155..7229942	expressed protein
LOC_Os06g13200	Os.52127.1.S1_at	7/11	6	+	7230573..7234609	Major Facilitator Superfamily protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27603.1.S1_at--303--177	1	Chr06:7215534..7215558 (25 bp)	ACCTGCTCAAAGAGGAGGGCTGCCA	LOC_Os06g13150
OsAffx.27603.1.S1_at--554--97	1	Chr06:7215546..7215570 (25 bp)	AGGAGGGCTGCCAGCGATGACCTCC	LOC_Os06g13150
OsAffx.27603.1.S1_at--121--435	1	Chr06:7215556..7215586 (25 bp)	CCAGCGATGACCTCCGGGCATGGAT	LOC_Os06g13150
OsAffx.27603.1.S1_at--1157--81	2	Chr06:7215650..7215674 (25 bp)	ATGGTAGAGGACCTGCTCCTTGTCA	LOC_Os06g13150
OsAffx.27603.1.S1_at--655--151	1	Chr06:7215831..7215855 (25 bp)	AGCAGCTGCTGATCCTAGAGTTGCA	LOC_Os06g13150
OsAffx.27603.1.S1_at--307--637	1	Chr06:7215841..7215865 (25 bp)	GATCCTAGAGTTGCATGGCCAAGAA	LOC_Os06g13150
OsAffx.27603.1.S1_at--720--595	1	Chr06:7215878..7215902 (25 bp)	GAGCAAGATTGATGGGTATCAGTCT	LOC_Os06g13150
OsAffx.27603.1.S1_at--101--787	1	Chr06:7215892..7215916 (25 bp)	GGTATCAGTCTAATCCCTCAAGTAT	LOC_Os06g13150
OsAffx.27603.1.S1_at--382--283	1	Chr06:7215911..7215935 (25 bp)	AAGTATCTCGCCTGGTACCTCGCAA	LOC_Os06g13150
OsAffx.27603.1.S1_at--842--45	1	Chr06:7215915..7215939 (25 bp)	ATCTCGCCTGGTACCTCGCAAGTAT	LOC_Os06g13150
OsAffx.27603.1.S1_at--104--997	1	Chr06:7215947..7215971 (25 bp)	TACCTCACCGGTATCAAAACCTAAT	LOC_Os06g13150

Target Sequence

ACCTGCTCAAAGAGGAGGGCTGCCAGCGATGACCTCCGGGCATGGATGGTAGAGGACCTGCTCCTTGTCAACTACATCGC
TGCCCATGGGGAATATGATGGAGCAGGAGCAGCTGCTGATCCTAGAGTTGCATGGCCAAGAAGGGGAAATGGTGGAGCAA
GATTGATGGGTATCAGTCTAATCCCTCAAGTATCTCGCCTGGTACCTCGCAAGTATCATCTGATACCTCACCGGTATCAA
AACCTAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis

Browse Element(s) Details