Browse Element(s) Details


OsAffx.27604.1.S1_x_at

Description tigr:9634.m01307
TID=OsAffx.27604.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Matrixin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1318011/11Matrixin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13110OsAffx.27658.1.S1_at8/116+7195592..7200418retrotransposon protein, putative, unclassified
LOC_Os06g13120OsAffx.15403.1.S1_at11/116+7200592..7202995hypothetical protein
LOC_Os06g13130NANA6+7204228..7204818hypothetical protein
LOC_Os06g13140OsAffx.27602.1.S1_at10/116+7208517..7211491transducin family protein, putative, expressed
LOC_Os06g13150OsAffx.27603.1.S1_at11/116+7215474..7216002hypothetical protein
LOC_Os06g13160Os.54594.1.S1_at11/116+7217854..7219284Plant viral-response family protein, expressed
LOC_Os06g13170Os.53308.1.A1_at7/116+7220866..7223018methyltransferase GidB family protein
LOC_Os06g13180OsAffx.27604.1.S1_x_at11/116+7223985..7225100Matrixin family protein, expressed
LOC_Os06g13190OsAffx.27605.1.S1_s_at11/116+7229155..7229942expressed protein
LOC_Os06g13200Os.52127.1.S1_at7/116+7230573..7234609Major Facilitator Superfamily protein
LOC_Os06g13210Os.52127.1.S1_at11/116+7246885..7250001POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005578cellular_componentextracellular matrix (sensu Metazoa)
GO:0031225cellular_componentanchored to membrane
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27604.1.S1_x_at--1060--3531Chr06:7224518..7224542 (25 bp)
CATCGACCGGGCGACGCTGAGCAAG
LOC_Os06g13180
OsAffx.27604.1.S1_x_at--95--5811Chr06:7224530..7224554 (25 bp)
GACGCTGAGCAAGGTGTTCGCGAGC
LOC_Os06g13180
OsAffx.27604.1.S1_x_at--745--2891Chr06:7224540..7224564 (25 bp)
AAGGTGTTCGCGAGCGCGTTCGCGC
LOC_Os06g13180
OsAffx.27604.1.S1_x_at--383--2091Chr06:7224622..7224646 (25 bp)
ACATCACCATCGGGTTCTACGGCGG
LOC_Os06g13180
OsAffx.27604.1.S1_x_at--1128--4011Chr06:7224850..7224874 (25 bp)
CGTCGGCGGCGGACTCCATCATGTT
LOC_Os06g13180
OsAffx.27604.1.S1_x_at--695--4831Chr06:7224881..7224905 (25 bp)
GCTCACGTCGCGCACCAAGAAGGTG
LOC_Os06g13180
OsAffx.27604.1.S1_x_at--434--7211Chr06:7224887..7224911 (25 bp)
GTCGCGCACCAAGAAGGTGAACCTC
LOC_Os06g13180
OsAffx.27604.1.S1_x_at--7--4891Chr06:7224892..7224916 (25 bp)
GCACCAAGAAGGTGAACCTCGCCAC
LOC_Os06g13180
OsAffx.27604.1.S1_x_at--294--4371Chr06:7224895..7224919 (25 bp)
CCAAGAAGGTGAACCTCGCCACCGA
LOC_Os06g13180
OsAffx.27604.1.S1_x_at--112--3311Chr06:7224932..7224956 (25 bp)
CATCCAGGGCCTGTACGGGAACAAC
LOC_Os06g13180
OsAffx.27604.1.S1_x_at--160--4271Chr06:7225031..7225055 (25 bp)
CCGGCCGTGGCGACGCTTGCTCGAC
LOC_Os06g13180
Target Sequence 
CATCGACCGGGCGACGCTGAGCAAGGTGTTCGCGAGCGCGTTCGCGCGGTGGTCGGCGGCGACGACGCTCAACTTCACGG
AGGCCGCGTCGGCGGCCGACGCCGACATCACCATCGGGTTCTACGGCGGCGACCACGGCGACGGCGAGGCGTTCGACGGG
CCGCTCGGCACGCTGGCGCACGCGTTCTCGCCGACCAACGGGCGCCTCCACCTGGACGCCTCGGAGGCGTGGGTGGCCGG
CGGCGACGTGACGCGGGCGTCGTCGAACGCCGCCGTCGACCTGGAGTCCGTGGCGGTGCACGAGATCGGCCACATCCTCG
GCCTCGGCCACTCGTCGGCGGCGGACTCCATCATGTTCCCGACGCTCACGTCGCGCACCAAGAAGGTGAACCTCGCCACC
GACGACGTCGCCGGCATCCAGGGCCTGTACGGGAACAACCCCAACTTCAAGGGCGTCACGCCGCCGGCGACGAGCAGCCG
GGAGATGGACAGCGCCGGCGCCGGCGAGCTCTCCCGGCCGTGGCGACGCTTGCTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27604.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis