Browse Element(s) Details


OsAffx.2764.1.S1_at

Description tigr:9630.m02530
TID=OsAffx.2764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2678011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26720Os.53176.1.S1_at11/112+15691973..15693281Inositol 1, 3, 4-trisphosphate 5/6-kinase family protein, expressed
LOC_Os02g26730OsAffx.12210.1.S1_at7/112+15698435..15698638hypothetical protein
LOC_Os02g26740Os.25411.1.A1_at2/112+15700031..15704838transposon protein, putative, Pong sub-class, expressed
LOC_Os02g26750NANA2+15705574..15706932transposon protein, putative, Pong sub-class
LOC_Os02g26760OsAffx.12211.1.S1_at11/112+15708966..15710565hypothetical protein
LOC_Os02g26770Os.11417.1.S1_at4/112+15711180..15712900Trans-cinnamate 4-monooxygenase, putative
LOC_Os02g26780OsAffx.2764.1.S1_at11/112+15717313..15719377transposon protein, putative, unclassified
LOC_Os02g26790Os.51784.1.S1_at11/112+15719957..15721664expressed protein
LOC_Os02g26790OsAffx.24440.1.S1_s_at11/112+15719957..15721664expressed protein
LOC_Os02g26790Os.9574.1.S1_at11/112+15719957..15721664expressed protein
LOC_Os02g26800NANA2+15723235..15726667expressed protein
LOC_Os02g26810Os.11417.1.S1_at11/112+15728958..15730985Trans-cinnamate 4-monooxygenase, putative, expressed
LOC_Os02g26820OsAffx.12212.1.S1_at11/112+15741979..15742407hypothetical protein
LOC_Os02g26820Os.40855.5.S1_x_at6/112+15741979..15742407hypothetical protein
LOC_Os02g26830NANA2+15743509..15744081hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2764.1.S1_at--493--6971Chr02:15718725..15718749 (25 bp)
GTAGCGCGCATATATACACCTGCAA
LOC_Os02g26780
OsAffx.2764.1.S1_at--548--5371Chr02:15718904..15718928 (25 bp)
GAAGACAATGAGTTGCCCTTGCATG
LOC_Os02g26780
OsAffx.2764.1.S1_at--231--10711Chr02:15718916..15718940 (25 bp)
TTGCCCTTGCATGAAACTTGATTGT
LOC_Os02g26780
OsAffx.2764.1.S1_at--729--7111Chr02:15718954..15718978 (25 bp)
GTCAGCACATGTTTGCAGTTCTGTT
LOC_Os02g26780
OsAffx.2764.1.S1_at--62--6251Chr02:15718988..15719012 (25 bp)
GATGGATGCCATTCCTGAAAGTTGC
LOC_Os02g26780
OsAffx.2764.1.S1_at--926--2811Chr02:15719006..15719030 (25 bp)
AAGTTGCATAGTTCGCAGGTGGACT
LOC_Os02g26780
OsAffx.2764.1.S1_at--293--4391Chr02:15719037..15719061 (25 bp)
GCCAAAAGTGTCTTTCCGTCGGATA
LOC_Os02g26780
OsAffx.2764.1.S1_at--936--5971Chr02:15719070..15719094 (25 bp)
GAGACATTTTCATGGTCGGACCAAA
LOC_Os02g26780
OsAffx.2764.1.S1_at--720--4971Chr02:15719107..15719131 (25 bp)
GCATGTTGCGTAGCTTCGGTAGCGA
LOC_Os02g26780
OsAffx.2764.1.S1_at--1027--2991Chr02:15719138..15719162 (25 bp)
AATGAAGTGCTCCATATCTGAGGAA
LOC_Os02g26780
OsAffx.2764.1.S1_at--650--10031Chr02:15719320..15719344 (25 bp)
TAGTTCCGAAGGGAGCACCGCGAAA
LOC_Os02g26780
Target Sequence 
GTAGCGCGCATATATACACCTGCAATTTTCAAGAAGGTTAAGTTTGAGATTATTAAATCCATGGATTGGGAAGTAATAGA
TTTTATTGATGAGGATACAGTAGTGAAGTATGTCATGTGCTTGAAAGAGAACAATGAGAAGCTGAAGATTTTGAACTGTA
CTTATGAGGAATCATTTTTGAAGACAATGAGTTGCCCTTGCATGAAACTTGATTGTGAAAGCCTTCCATGTCAGCACATG
TTTGCAGTTCTGTTTTATTTGAAGATGGATGCCATTCCTGAAAGTTGCATAGTTCGCAGGTGGACTGTGAAAGCCAAAAG
TGTCTTTCCGTCGGATAGATATGGTGAGACATTTTCATGGTCGGACCAAATGGAAAGGTATCGCATGTTGCGTAGCTTCG
GTAGCGAAGTACTAATGAAGTGCTCCATATCTGAGGAATGTACATTGAAGGTGATGGAGATGCTAGAAAAGTTGGATTTA
GAAACTGAAGATTGTGATGGTAGTTCCGAAGGGAGCACCGCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis