Browse Element(s) Details


OsAffx.27653.1.S1_x_at

Description tigr:9634.m01568
TID=OsAffx.27653.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g325602/11hypothetical protein
LOC_Os05g172501/11hypothetical protein
LOC_Os12g231001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32520OsAffx.29169.1.S1_at11/113+18551186..18553110retrotransposon protein, putative, LINE subclass
LOC_Os03g32520OsAffx.29169.3.S1_at4/113+18551186..18553110retrotransposon protein, putative, LINE subclass
LOC_Os03g32526Os.8207.1.S1_at2/113+18557959..18563602expressed protein
LOC_Os03g32532OsAffx.27736.1.S1_at10/113+18564857..18565083NA
LOC_Os03g32540OsAffx.14902.1.A1_at4/113+18566095..18567975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32550Os.1709.1.S1_x_at11/113+18570532..18572832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32560Os.54287.1.S1_at6/113+18573417..18576957hypothetical protein
LOC_Os03g32560OsAffx.27653.1.S1_x_at2/113+18573417..18576957hypothetical protein
LOC_Os03g32570OsAffx.25341.1.S1_at11/113+18579201..18580260hypothetical protein
LOC_Os03g32580Os.7982.1.S1_at10/113+18590819..18593412BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os03g32590Os.50304.1.S1_x_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32590Os.50304.1.S2_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os03g32590Os.50304.2.S1_at11/113+18593422..18602509Transcription initiation factor TFIID component TAF4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27653.1.S1_x_at--269--4116Chr10:6874696..6874722 (25 bp)
CGAAGCCGTCCTTCTTCGCTGGATG
NONE
OsAffx.27653.1.S1_x_at--625--9575Chr12:13059800..13059826 (25 bp)
TCTTCGCTGGATGCCAGGGCGAACT
LOC_Os12g23100
OsAffx.27653.1.S1_x_at--1099--8371Chr06:8852571..8852595 (25 bp)
GGCGAACTGGCTATGGCGAAGTCAT
NONE
OsAffx.27653.1.S1_x_at--391--4111Chr06:8852569..8852593 (25 bp)
CGAACTGGCTATGGCGAAGTCATCC
NONE
OsAffx.27653.1.S1_x_at--611--1951Chr06:8852566..8852590 (25 bp)
ACTGGCTATGGCGAAGTCATCCTTC
NONE
OsAffx.27653.1.S1_x_at--690--8491Chr06:8852564..8852588 (25 bp)
TGGCTATGGCGAAGTCATCCTTCTT
NONE
OsAffx.27653.1.S1_x_at--171--10091Chr06:8852560..8852584 (25 bp)
TATGGCGAAGTCATCCTTCTTCGTC
NONE
OsAffx.27653.1.S1_x_at--472--4591Chr06:8852557..8852580 (24 bp)
GCGAAGTCATCCTTCTTCGTCAGGG
NONE
OsAffx.27653.1.S1_x_at--241--2851Chr06:8852557..8852577 (21 bp)
AAGTCATCCTTCTTCGTCAGGGGGT
NONE
OsAffx.27653.1.S1_x_at--102--7091NONE
GTCATCCTTCTTCGTCAGGGGGTCA
NONE
OsAffx.27653.1.S1_x_at--1073--4291NONE
CCTTCTTCGTCAGGGGGTCACCAGA
NONE
Target Sequence 
CGAAGCCGTCCTTCTTCGCTGGATGCCAGGGCGAACTGGCTATGGCGAAGTCATCCTTCTTCGTCAGGGGGTCACCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27653.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis