Browse Element(s) Details


OsAffx.27677.1.S1_at

Description tigr:9634.m01690
TID=OsAffx.27677.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable cyst nematode resistance gene - wheat (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1679011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16760Os.27435.1.S1_x_at4/116+9708411..9709587hypothetical protein
LOC_Os06g16770OsAffx.4851.1.S1_x_at11/116+9711602..9711993expressed protein
LOC_Os06g16780OsAffx.26306.1.S1_s_at11/116+9713062..9713694hypothetical protein
LOC_Os06g16780OsAffx.26306.2.S1_at11/116+9713062..9713694hypothetical protein
LOC_Os06g16790OsAffx.27677.1.S1_at11/116+9714215..9723860NB-ARC domain containing protein, expressed
LOC_Os06g16790OsAffx.27677.1.S1_s_at11/116+9714215..9723860NB-ARC domain containing protein, expressed
LOC_Os06g16800OsAffx.28610.4.S1_s_at11/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.4.S1_x_at11/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.2.S1_x_at5/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.3.S1_at2/116+9728463..9729124hypothetical protein
LOC_Os06g16810OsAffx.4854.1.S1_at11/116+9733901..9734545Polygalacturonase precursor, putative
LOC_Os06g16820OsAffx.27678.1.S1_at11/116+9742064..9742879hypothetical protein
LOC_Os06g16830NANA6+9743691..9744196retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27677.1.S1_at--841--4091Chr06:9715253..9715277 (25 bp)
CGACGGTGCTTTATTCGCGATTCTG
LOC_Os06g16790
OsAffx.27677.1.S1_at--286--1931Chr06:9715251..9715275 (25 bp)
ACGGTGCTTTATTCGCGATTCTGCG
LOC_Os06g16790
OsAffx.27677.1.S1_at--484--9071Chr06:9715247..9715271 (25 bp)
TGCTTTATTCGCGATTCTGCGGCAA
LOC_Os06g16790
OsAffx.27677.1.S1_at--335--3671Chr06:9715245..9715269 (25 bp)
CTTTATTCGCGATTCTGCGGCAAAG
LOC_Os06g16790
OsAffx.27677.1.S1_at--780--10211Chr06:9715242..9715266 (25 bp)
TATTCGCGATTCTGCGGCAAAGAAA
LOC_Os06g16790
OsAffx.27677.1.S1_at--601--4631Chr06:9715237..9715261 (25 bp)
GCGATTCTGCGGCAAAGAAATCATT
LOC_Os06g16790
OsAffx.27677.1.S1_at--310--5591Chr06:9715221..9715245 (25 bp)
GAAATCATTAAATCCAGTTGCTTTG
LOC_Os06g16790
OsAffx.27677.1.S1_at--694--2271Chr06:9715212..9715236 (25 bp)
AAATCCAGTTGCTTTGTCCAAACCT
LOC_Os06g16790
OsAffx.27677.1.S1_at--177--4351Chr06:9715208..9715232 (25 bp)
CCAGTTGCTTTGTCCAAACCTGCAA
LOC_Os06g16790
OsAffx.27677.1.S1_at--352--6651Chr06:9715205..9715229 (25 bp)
GTTGCTTTGTCCAAACCTGCAAACA
LOC_Os06g16790
OsAffx.27677.1.S1_at--423--10171Chr06:9715200..9715224 (25 bp)
TTTGTCCAAACCTGCAAACAGCCCT
LOC_Os06g16790
Target Sequence 
CGACGGTGCTTTATTCGCGATTCTGCGGCAAAGAAATCATTAAATCCAGTTGCTTTGTCCAAACCTGCAAACAGCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis